Mercurial > repos > ecology > vigiechiro_idvalid
comparison IdValidTidyen.xml @ 1:eb19a5089b56 draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit 7ef0e58cbcbf41088e359f00b6c86504c773c271
author | ecology |
---|---|
date | Fri, 26 Apr 2019 12:21:27 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
0:8c472c4f1bf5 | 1:eb19a5089b56 |
---|---|
1 <tool id="vigiechiro_idvalid" name="Tadarida identifications validation" version="@VERSION@"> | |
2 <description>Integrate identifications from animal detection on acoustic recordings</description> | |
3 <macros> | |
4 <import>vigiechiro_macros.xml</import> | |
5 </macros> | |
6 <expand macro="vigiechiro_requirements"/> | |
7 <command detect_errors="exit_code"><![CDATA[ | |
8 Rscript '$__tool_directory__/IdValidTidy.R' | |
9 '$inputfile' | |
10 '$output' | |
11 ]]> | |
12 </command> | |
13 <inputs> | |
14 <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/> | |
15 </inputs> | |
16 <outputs> | |
17 <data name="output" format="tabular" from_work_dir="IdValidTidy.tabular" label="${tool.name} on ${on_string}"/> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="inputfile" value="output_tidy.tabular"/> | |
22 <output name="output" file="IdValidTidy.tabular"/> | |
23 </test> | |
24 </tests> | |
25 <help><![CDATA[ | |
26 .. class:: infomark | |
27 | |
28 ===================================== | |
29 Tadarida identifications integration | |
30 ===================================== | |
31 | |
32 **What it does** | |
33 | |
34 This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations. | |
35 | |
36 | |
37 **Arguments** | |
38 | |
39 - The input is a tabular file, output from the tool Tadarida data cleaner. | |
40 - The output is a single tabular file with validated Ids | |
41 ]]></help> | |
42 <expand macro="vigiechiro_bibref" /> | |
43 </tool> |