diff IdValiden.xml @ 0:8c472c4f1bf5 draft

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit d2de8e10c11bfa3b04729e59bba58e08d23b56aa

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IdValiden.xml	Wed Mar 13 11:18:58 2019 -0400
@@ -0,0 +1,46 @@
+<tool id="vigiechiro_idvalid" name="Tadarida identifications integration" version="@VERSION@">
+    <description>Integrate identifications from animal detection on acoustic recordings</description>
+    <macros>
+        <import>vigiechiro_macros.xml</import>
+    </macros>
+    <requirements>
+        <requirement type="package" version="1.10.4">r-data.table</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        Rscript '$__tool_directory__/IdValid.R' 
+            '$inputfile'  
+            '$__tool_directory__/Referentiel_seuils_C2.csv'  
+            '$output'
+]]>
+    </command>
+    <inputs>
+        <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/>	    
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" from_work_dir="output.tabular" label="${tool.name} on ${on_string}"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="inputfile" value="IdCor2Layer_Test1_out.tabular"/>
+            <output name="output" file="BilanEnrichiPF_Test1.tabular"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+.. class:: infomark 
+
+=====================================
+Tadarida identifications integration
+=====================================
+
+**What it does**
+
+This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations. 
+
+
+**Arguments**
+
+- The input is a tabular file, output from the tool Tadarida data cleaner.
+- The output is a single tabular file with validated Ids
+  ]]></help>
+    <expand macro="vigiechiro_bibref" />
+</tool>