Mercurial > repos > ecology > vigiechiro_idvalid
diff IdValiden.xml @ 0:8c472c4f1bf5 draft
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit d2de8e10c11bfa3b04729e59bba58e08d23b56aa
author | ecology |
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date | Wed, 13 Mar 2019 11:18:58 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IdValiden.xml Wed Mar 13 11:18:58 2019 -0400 @@ -0,0 +1,46 @@ +<tool id="vigiechiro_idvalid" name="Tadarida identifications integration" version="@VERSION@"> + <description>Integrate identifications from animal detection on acoustic recordings</description> + <macros> + <import>vigiechiro_macros.xml</import> + </macros> + <requirements> + <requirement type="package" version="1.10.4">r-data.table</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + Rscript '$__tool_directory__/IdValid.R' + '$inputfile' + '$__tool_directory__/Referentiel_seuils_C2.csv' + '$output' +]]> + </command> + <inputs> + <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/> + </inputs> + <outputs> + <data name="output" format="tabular" from_work_dir="output.tabular" label="${tool.name} on ${on_string}"/> + </outputs> + <tests> + <test> + <param name="inputfile" value="IdCor2Layer_Test1_out.tabular"/> + <output name="output" file="BilanEnrichiPF_Test1.tabular"/> + </test> + </tests> + <help><![CDATA[ +.. class:: infomark + +===================================== +Tadarida identifications integration +===================================== + +**What it does** + +This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations. + + +**Arguments** + +- The input is a tabular file, output from the tool Tadarida data cleaner. +- The output is a single tabular file with validated Ids + ]]></help> + <expand macro="vigiechiro_bibref" /> +</tool>