Mercurial > repos > ecology > vigiechiro_idvalid
view IdValidTidyen.xml @ 1:eb19a5089b56 draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/vigiechiro commit 7ef0e58cbcbf41088e359f00b6c86504c773c271
author | ecology |
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date | Fri, 26 Apr 2019 12:21:27 -0400 |
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<tool id="vigiechiro_idvalid" name="Tadarida identifications validation" version="@VERSION@"> <description>Integrate identifications from animal detection on acoustic recordings</description> <macros> <import>vigiechiro_macros.xml</import> </macros> <expand macro="vigiechiro_requirements"/> <command detect_errors="exit_code"><![CDATA[ Rscript '$__tool_directory__/IdValidTidy.R' '$inputfile' '$output' ]]> </command> <inputs> <param name="inputfile" type="data" format="tabular" label="Corrected observation file" help="Use output file from Tadarida data clean : a sampling session file corrected."/> </inputs> <outputs> <data name="output" format="tabular" from_work_dir="IdValidTidy.tabular" label="${tool.name} on ${on_string}"/> </outputs> <tests> <test> <param name="inputfile" value="output_tidy.tabular"/> <output name="output" file="IdValidTidy.tabular"/> </test> </tests> <help><![CDATA[ .. class:: infomark ===================================== Tadarida identifications integration ===================================== **What it does** This tool allows to integrate identifications made by observers and validators and will provide an input for synthesis of participations. **Arguments** - The input is a tabular file, output from the tool Tadarida data cleaner. - The output is a single tabular file with validated Ids ]]></help> <expand macro="vigiechiro_bibref" /> </tool>