Mercurial > repos > ecology > xarray_coords_info
comparison macros_netcdf2netcdf.xml @ 2:3e73f657a998 draft
"planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/data_manipulation/xarray/ commit 2166974df82f97557b082a9e55135098e61640c4"
| author | ecology |
|---|---|
| date | Thu, 20 Jan 2022 17:07:54 +0000 |
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| 1:6015f30a7258 | 2:3e73f657a998 |
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| 1 <macros> | |
| 2 <xml name="coord_range"> | |
| 3 <repeat name="user_choice" title="Filter by coordinate values" min="0" max="20" help="Use this option to filter on the values of the selected coordinate"> | |
| 4 <param name="dim" type="select" label="Dimensions"> | |
| 5 <options from_dataset="var_tab"> | |
| 6 <column name="value" index="0"/> | |
| 7 </options> | |
| 8 </param> | |
| 9 <conditional name="condi_between"> | |
| 10 <param name="comparator" type="select" label="Comparator"> | |
| 11 <option value="is">is</option> | |
| 12 <option value="from">from</option> | |
| 13 <option value="to">to</option> | |
| 14 <option value="sl">slice(threshold1,threshold2)</option> | |
| 15 </param> | |
| 16 <when value="sl"> | |
| 17 <param name="t1" type="text" value="" label="Choose the start value for slice"/> | |
| 18 <param name="t2" type="text" value="" label="Choose the end value for slice"/> | |
| 19 </when> | |
| 20 <when value="to"> | |
| 21 <param name="value" type="text" value="" label="Choose the end value"/> | |
| 22 </when> | |
| 23 <when value="from"> | |
| 24 <param name="value" type="text" value="" label="Choose the start value"/> | |
| 25 </when> | |
| 26 <when value="is"> | |
| 27 <param name="value" type="text" value="" label="Choose the value to select"/> | |
| 28 <yield /> | |
| 29 </when> | |
| 30 </conditional> | |
| 31 </repeat> | |
| 32 </xml> | |
| 33 <xml name="section_variables"> | |
| 34 <section name="variable" title="Select variables"> | |
| 35 <param name="var" type="select" multiple="true" label="Choose variables to extract"> | |
| 36 <options from_dataset="var_tab"> | |
| 37 <column name="name" index="0"/> | |
| 38 <column name="value" index="0"/> | |
| 39 </options> | |
| 40 </param> | |
| 41 <param type="float" name="scale" optional="true" help="scale factor (float) to apply to the selected variable (optional and only if a variable is selected)"/> | |
| 42 <param name="write_all" type="boolean" checked="false" label="Write all variables to new netCDF file (only if a variable is selected)"/> | |
| 43 <param name="keep_attributes" type="boolean" checked="true" label="Keep all attributes (only if a variable is selected)"/> | |
| 44 </section> | |
| 45 </xml> | |
| 46 <xml name="section_coords"> | |
| 47 <section name="subset_coords" title="Subset by coordinates"> | |
| 48 <conditional name="tsel"> | |
| 49 <param name="by_click" type="select" optional="true" label="Coordinate values"> | |
| 50 <option value="sel">Coordinate values (sel)</option> | |
| 51 <option value="isel">Coordinate indices (isel)</option> | |
| 52 <option value="isel_list" selected="true">Coordinate values from list</option> | |
| 53 </param> | |
| 54 <when value="sel"> | |
| 55 <expand macro="coord_range"> | |
| 56 <param name="method" type="select" multiple="false" label="Choose selection method"> | |
| 57 <option value="None">only exact matches</option> | |
| 58 <option value="nearest">use nearest valid index value</option> | |
| 59 <option value="pad">propagate last valid index value forward</option> | |
| 60 <option value="backfill">propagate next valid index value backward</option> | |
| 61 </param> | |
| 62 </expand> | |
| 63 </when> | |
| 64 <when value="isel"> | |
| 65 <expand macro="coord_range"/> | |
| 66 </when> | |
| 67 <when value="isel_list"> | |
| 68 <repeat name="user_choice" title="Filter by coordinate values" min="0" max="20" help="Use this option to filter on the values of the selected coordinate"> | |
| 69 <param name="dim" type="select" label="Dimensions"> | |
| 70 <options from_dataset="var_tab"> | |
| 71 <column name="value" index="0"/> | |
| 72 </options> | |
| 73 </param> | |
| 74 <param type="data" label="Tabular containing values of this dimension" name="dim_tab" format="tabular" help="File containing values for this dimension."/> | |
| 75 <conditional name="condi_between"> | |
| 76 <param name="comparator" type="select" label="Comparator"> | |
| 77 <option value="is">is</option> | |
| 78 <option value="from">from</option> | |
| 79 <option value="to">to</option> | |
| 80 <option value="sl">slice(threshold1,threshold2)</option> | |
| 81 </param> | |
| 82 <when value="sl"> | |
| 83 <param name="t1" type="select" multiple="false" label="Choose the start value for slice"> | |
| 84 <options from_dataset="dim_tab"> | |
| 85 <column name="name" index="1"/> | |
| 86 <column name="value" index="0"/> | |
| 87 </options> | |
| 88 </param> | |
| 89 <param name="t2" type="select" multiple="false" label="Choose the end value for slice"> | |
| 90 <options from_dataset="dim_tab"> | |
| 91 <column name="name" index="1"/> | |
| 92 <column name="value" index="0"/> | |
| 93 </options> | |
| 94 </param> | |
| 95 </when> | |
| 96 <when value="is"> | |
| 97 <param name="value" type="select" multiple="false" label="Choose the value to select"> | |
| 98 <options from_dataset="dim_tab"> | |
| 99 <column name="name" index="1"/> | |
| 100 <column name="value" index="0"/> | |
| 101 </options> | |
| 102 </param> | |
| 103 </when> | |
| 104 <when value="to"> | |
| 105 <param name="value" type="select" multiple="false" label="Choose the end value"> | |
| 106 <options from_dataset="dim_tab"> | |
| 107 <column name="name" index="1"/> | |
| 108 <column name="value" index="0"/> | |
| 109 </options> | |
| 110 </param> | |
| 111 </when> | |
| 112 <when value="from"> | |
| 113 <param name="value" type="select" multiple="false" label="Choose the start value"> | |
| 114 <options from_dataset="dim_tab"> | |
| 115 <column name="name" index="1"/> | |
| 116 <column name="value" index="0"/> | |
| 117 </options> | |
| 118 </param> | |
| 119 </when> | |
| 120 </conditional> | |
| 121 </repeat> | |
| 122 </when> | |
| 123 </conditional> | |
| 124 </section> | |
| 125 </xml> | |
| 126 <xml name="section_where"> | |
| 127 <section name="mask_values" title="Advanced options to mask by values"> | |
| 128 <conditional name="mask_condi"> | |
| 129 <param name="mask_option" type="select" multiple="false" label="Option for masked values"> | |
| 130 <option value="keep" selected="true">Fill with NA</option> | |
| 131 <option value="drop">Drop values</option> | |
| 132 <option value="other">Set constant</option> | |
| 133 </param> | |
| 134 <when value="keep"/> | |
| 135 <when value="drop"/> | |
| 136 <when value="other"> | |
| 137 <param name="set_other" type="float" value="0" label="Value to use for locations in this object where cond is False." /> | |
| 138 </when> | |
| 139 </conditional> | |
| 140 <param name="where_condition" type="data" optional="true" format="txt" label="file containing a where expression" /> | |
| 141 </section> | |
| 142 </xml> | |
| 143 </macros> |