Mercurial > repos > ecology > zoo_project_ogc_api_processes
annotate macros.xml @ 2:bcb6009d5af7 draft default tip
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
author | ecology |
---|---|
date | Wed, 08 May 2024 21:05:47 +0000 |
parents | f6288dd4b77a |
children |
rev | line source |
---|---|
0
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
1 <macros> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
2 <xml name="requirements"> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
3 <requirements> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
4 <requirement type="package" version="4.3.1">r-base</requirement> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
5 <requirement type="package" version="1.20.4">r-getopt</requirement> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
6 <requirement type="package" version="0.2.3">r-httr2</requirement> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
7 <requirement type="package" version="1.8.7">r-jsonlite</requirement> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
8 </requirements> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
9 </xml> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
10 <xml name="out_options"> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
11 <option value="uint8">uint8</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
12 <option value="uint16">uint16</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
13 <option value="int16">int16</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
14 <option value="int32">int32</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
15 <option value="float">float</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
16 <option value="double">double</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
17 </xml> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
18 <xml name="format_options"> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
19 <option value="image/tiff">image/tiff</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
20 <option value="image/jpeg">image/jpeg</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
21 <option value="image/png">image/png</option> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
22 </xml> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
23 <xml name="citations"> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
24 <citations> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
25 <citation type="bibtex">@Manual{httr2, title = {httr2: Perform HTTP Requests and Process the Responses}, author = {Hadley Wickham}, year = {2023}, note = {R package version 1.0.0, https://github.com/r-lib/httr2}, url = {https://httr2.r-lib.org},}</citation> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
26 <citation type="doi">10.48550/arXiv.1403.2805</citation> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
27 </citations> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
28 </xml> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
29 <xml name="help"> |
2
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
30 <help>This tool is a wrapper for OGC API Processes (OTB) coming from the Zoo Project (https://zoo-project.github.io/docs/intro.html) and was created using the OGC-API-Process2Galaxy tool (https://github.com/AquaINFRA/OGC-API-Process2Galaxy). Check the README in the repository for more information.</help> |
0
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
31 </xml> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
32 <xml name="tests"> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
33 <tests> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
34 <test> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
35 <param name="select_process" value="OTB.BandMath"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
36 <param name="il" value="otb_band_math_test_input.txt"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
37 <param name="out" value="float"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
38 <param name="ram" value="256"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
39 <param name="exp" value="im1b3,im1b2,im1b1"/> |
2
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
40 <param name="out_outformat" value="image/tiff"/> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
41 <output name="output_data"> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
42 <assert_contents> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
43 <has_n_lines n="1"/> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
44 </assert_contents> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
45 </output> |
0
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
46 </test> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
47 <test> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
48 <param name="select_process" value="OTB.MeanShiftSmoothing"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
49 <param name="in" value="otb_mean_shift_smoothing_test_input.txt"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
50 <param name="fout" value="float"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
51 <param name="foutpos" value="float"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
52 <param name="spatialr" value="5"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
53 <param name="ranger" value="15"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
54 <param name="thres" value="0.1"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
55 <param name="maxiter" value="100"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
56 <param name="rangeramp" value="0"/> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
57 <param name="modesearch" value="False"/> |
2
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
58 <param name="fout_outformat" value="image/tiff"/> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
59 <param name="foutpos_outformat" value="image/tiff"/> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
60 <output name="output_data"> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
61 <assert_contents> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
62 <has_n_lines n="2"/> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
63 </assert_contents> |
bcb6009d5af7
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
ecology
parents:
0
diff
changeset
|
64 </output> |
0
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
65 </test> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
66 </tests> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
67 </xml> |
f6288dd4b77a
planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
ecology
parents:
diff
changeset
|
68 </macros> |