annotate macros.xml @ 2:bcb6009d5af7 draft default tip

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit e03f4d27ec44d873aacdf406d7a26ec8038e9b05
author ecology
date Wed, 08 May 2024 21:05:47 +0000
parents f6288dd4b77a
children
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f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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4 <requirement type="package" version="4.3.1">r-base</requirement>
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5 <requirement type="package" version="1.20.4">r-getopt</requirement>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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6 <requirement type="package" version="0.2.3">r-httr2</requirement>
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7 <requirement type="package" version="1.8.7">r-jsonlite</requirement>
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8 </requirements>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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9 </xml>
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10 <xml name="out_options">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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11 <option value="uint8">uint8</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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12 <option value="uint16">uint16</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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13 <option value="int16">int16</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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14 <option value="int32">int32</option>
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15 <option value="float">float</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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16 <option value="double">double</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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17 </xml>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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18 <xml name="format_options">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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19 <option value="image/tiff">image/tiff</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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20 <option value="image/jpeg">image/jpeg</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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21 <option value="image/png">image/png</option>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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22 </xml>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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23 <xml name="citations">
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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24 <citations>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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25 <citation type="bibtex">@Manual{httr2, title = {httr2: Perform HTTP Requests and Process the Responses}, author = {Hadley Wickham}, year = {2023}, note = {R package version 1.0.0, https://github.com/r-lib/httr2}, url = {https://httr2.r-lib.org},}</citation>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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26 <citation type="doi">10.48550/arXiv.1403.2805</citation>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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27 </citations>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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28 </xml>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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29 <xml name="help">
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30 <help>This tool is a wrapper for OGC API Processes (OTB) coming from the Zoo Project (https://zoo-project.github.io/docs/intro.html) and was created using the OGC-API-Process2Galaxy tool (https://github.com/AquaINFRA/OGC-API-Process2Galaxy). Check the README in the repository for more information.</help>
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31 </xml>
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32 <xml name="tests">
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33 <tests>
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34 <test>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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35 <param name="select_process" value="OTB.BandMath"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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36 <param name="il" value="otb_band_math_test_input.txt"/>
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37 <param name="out" value="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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38 <param name="ram" value="256"/>
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39 <param name="exp" value="im1b3,im1b2,im1b1"/>
2
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40 <param name="out_outformat" value="image/tiff"/>
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41 <output name="output_data">
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42 <assert_contents>
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43 <has_n_lines n="1"/>
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44 </assert_contents>
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45 </output>
0
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46 </test>
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47 <test>
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48 <param name="select_process" value="OTB.MeanShiftSmoothing"/>
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49 <param name="in" value="otb_mean_shift_smoothing_test_input.txt"/>
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50 <param name="fout" value="float"/>
f6288dd4b77a planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/ogc_api_processes_wrapper commit 4089d69de9c54df0930f55572e95bf3d22bf5e70
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51 <param name="foutpos" value="float"/>
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52 <param name="spatialr" value="5"/>
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53 <param name="ranger" value="15"/>
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54 <param name="thres" value="0.1"/>
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55 <param name="maxiter" value="100"/>
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56 <param name="rangeramp" value="0"/>
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57 <param name="modesearch" value="False"/>
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58 <param name="fout_outformat" value="image/tiff"/>
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59 <param name="foutpos_outformat" value="image/tiff"/>
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60 <output name="output_data">
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61 <assert_contents>
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62 <has_n_lines n="2"/>
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63 </assert_contents>
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64 </output>
0
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65 </test>
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66 </tests>
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67 </xml>
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68 </macros>