comparison runMapping_cDNA_wrapper.pl @ 3:bf1f8bc4abe6 default tip

minor updates for v2.6

2:2d86d5b112e8

# REMOVE PARAMETERS FOR OPTIONAL FILES WHICH WERE NOT PROVIDED

my @cmd=removeUnusedOptions(@ARGV);

# RUN COMMAND
# NOTE: FIRST ARG EXPECTED TO BE EXECUTABLE
my $stderr;
eval { $stderr=`@cmd 2>&1`; };
if ( $@ ) {
    print STDERR "Newbler ERROR: $stderr\n";
    `cat $outdir/assembly/454NewblerProgress.txt 1>&2`;
    die($@);
}

3:bf1f8bc4abe6

# REMOVE PARAMETERS FOR OPTIONAL FILES WHICH WERE NOT PROVIDED

my @cmd=removeUnusedOptions(@ARGV);

# RUN COMMAND
my $stderr;
eval { $stderr=`runMapping @cmd 2>&1`; };
if ( $@ ) {
    print STDERR "Newbler ERROR: $stderr\n";
    `cat $outdir/assembly/454NewblerProgress.txt 1>&2`;
    die($@);
}