comparison bsmap_fasta.loc.sample @ 12:2ff1bef33bdd draft

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author eiriche
date Fri, 30 Nov 2012 09:14:49 -0500
parents 41f30b042bac
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11:413c742682f7 12:2ff1bef33bdd
1 #This is a sample file distributed with Galaxy that enables BSMAP
2 #to use a directory of reference FastA sequences data files.The bsmap_fasta.loc
3 #file has this format (longer white space characters are TAB characters):
4 #
5 #<unique_build_id> <dbkey> <display_name> <file_path>
6 #
7 #
8 #Your bsmap_fasta.loc file should include an entry per line for each
9 reference you have stored. For example:
10 #
11 #phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fasta
12 #hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fasta
13 #hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fasta
14 #/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fasta
15 #...etc...
16 #