Mercurial > repos > eiriche > bsmap
view bsmap_meth_caller.sh @ 22:a55691c07823 draft
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author | eiriche |
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date | Mon, 03 Dec 2012 02:42:04 -0500 |
parents | 98a0a60e934c |
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#!/bin/bash # # Galaxy wrapper for BSMAP Methylation Caller # set -e #get parameters until [ $# -eq 0 ] do case $1 in input=*) input=${1#input=} ;; method=*) method=${1#method=} ;; output=*) output=${1#output=} ;; tempdir=*) tempdir=${1#tempdir=} ;; ref=*) ref=${1#ref=} ;; esac shift done methratio.py -o $output -d $ref -q $input