# HG changeset patch
# User eiriche
# Date 1354522172 18000
# Node ID c60a5a1ef9e81b8b5c5099a99c6620e3d21d0a66
# Parent  0bc00f619bc7bdfe1fda5c912bd6eda8262f2c73
Deleted selected files

diff -r 0bc00f619bc7 -r c60a5a1ef9e8 parsewig.sh
--- a/parsewig.sh	Mon Dec 03 02:53:01 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,51 +0,0 @@
-#!/bin/bash
-#
-# Galaxy wrapper for BSMAP Methylation Caller
-#
-
-set -e
-
-
-#get parameters
-
-until [ $# -eq 0 ]
-do
-	case $1 in
-		input=*)
-			input=${1#input=}
-			;;
-		extract=*)
-			extract=${1#extract=}
-			;;
-		context=*)
-			context=${1#context=}
-			;;
-		depth=*)
-			depth="cutoff=${1#depth=}"
-			;;
-		cov_out=*)
-			cov_out=${1#cov_out=}
-			;;
-		meth_out=*)
-			meth_out=${1#meth_out=}
-			;;
-	esac
-	shift
-done
-
-case $extract in
-      c)
-	output="-cov_out=$cov_out";;
-      m)
-	output="-meth_out=$meth_out";;
-      b)
-	output="-meth_out=$meth_out -cov_out=$cov_out";;
-esac
-
-if [ "$context" != "" ] 
-then
-    context="-context=$context"
-fi
-
-
-perl ~/dependencies/wig-parser/wiggle_extractor.pl -e $extract $context $output $input 2>&1>/dev/null
\ No newline at end of file