annotate SumTest.xml @ 5:635c4cfd83ee draft default tip

Uploaded
author elindfor
date Wed, 15 Jan 2014 04:33:21 -0500
parents d1cd633e151a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
1 <tool id="SumTest_rpy" name="SumTest">
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
2 <description>Sum of numbers from one column</description>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
3 <command interpreter="python">SumTest.py $input $out_file1 $col1</command>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
4 <inputs>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
5 <param name="input" type="data" format="tabular" label="Dataset"/>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
6 <param name="col1" type="data_column" data_ref="input" numerical="True" label="Numerical column for x axis" />
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
7 </inputs>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
8 <outputs>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
9 <data format="txt" name="out_file1" />
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
10 </outputs>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
11 <requirements>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
12 <requirement type="python-module">rpy</requirement>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
13 </requirements>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
14 <help>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
15
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
16 .. class:: infomark
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
17
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
18 **TIP:** If your data is not TAB delimited, use *Text Manipulation-&gt;Convert*
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
19
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
20 -----
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
21
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
22 **Syntax**
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
23
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
24 This tool creates a simple sum from numeric values of a selected dataset.
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
25
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
26 **Example**
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
27
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
28 - Input file::
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
29
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
30 1
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
31 2
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
32 3
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
33 4
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
34 5
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
35
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
36
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
37 </help>
d1cd633e151a Uploaded
elindfor
parents:
diff changeset
38 </tool>