Mercurial > repos > engineson > multiqc

annotate readme.rst @ 6:66f1187ed363 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 5260237afe6ac9940e1f45e323d77c3a7c38cc40-dirty
author engineson
date Tue, 04 Oct 2016 04:02:10 -0400
parents a6c5c30227e0
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
1 ========================
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
2 Galaxy multiqc wrapper
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
3 ========================
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
4
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
5 Aggregate results from bioinformatics analyses across many samples into a single report
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
6
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
7 MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
8
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
9 ============
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
10 Installation
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
11 ============
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
12
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
13 Requirements: pkg-config
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
14
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
15 Conda recipe: A conda recipe exists in bioconda repository. If you have a recent Galaxy release, the packages installation is not mandatory.
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
16
3
a6c5c30227e0 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents: 2
diff changeset
17 ================
0
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
18 MultiQC webpage
2
35c97cd9e35f planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents: 1
diff changeset
19 ================
0
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
20
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
21 Important: For a good view of multiqc webpage, you need to deactivate the sanitize_all_html option in galaxy.ini
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
22
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
23 sanitize_all_html = False
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
24
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
25 =======
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
26 History
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
27 =======
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
28
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
29 * v0.6: Initial public release
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
30
1
9560828b63f2 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents: 0
diff changeset
31 ==========
0
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
32 Citation
1
9560828b63f2 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents: 0
diff changeset
33 ==========
0
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
34
8f25feb85166 planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
engineson
parents:
diff changeset
35 Created by EnginesOn company