annotate test-data/log_samtools.txt @ 3:a6c5c30227e0 draft

planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty

[2016-05-23 09:14:29,851] multiqc                                            [INFO   ]  This is MultiQC v0.6
[2016-05-23 09:14:29,851] multiqc                                            [DEBUG  ]  Command     : /root/dependencies/multiqc/0.6/cmonjeau/package_multiqc_0_6/021c59fc29be/bin/multiqc multiqc_WDir
[2016-05-23 09:14:29,851] multiqc                                            [DEBUG  ]  Working dir : /root/galaxy/database/jobs_directory/000/89/working
[2016-05-23 09:14:29,851] multiqc                                            [DEBUG  ]  Template    : default
[2016-05-23 09:14:29,851] multiqc                                            [DEBUG  ]  No MultiQC config found: /root/dependencies/multiqc/0.6/cmonjeau/package_multiqc_0_6/021c59fc29be/lib/python/multiqc-0.6-py2.7.egg/multiqc_config.yaml
[2016-05-23 09:14:29,851] multiqc                                            [DEBUG  ]  No MultiQC config found: /root/.multiqc_config.yaml
[2016-05-23 09:14:29,851] multiqc                                            [DEBUG  ]  No MultiQC config found: multiqc_config.yaml
[2016-05-23 09:14:29,979] multiqc                                            [INFO   ]  Searching 'multiqc_WDir'
[2016-05-23 09:14:29,979] multiqc                                            [DEBUG  ]  Analysing modules: snpeff, qualimap, featureCounts, methylQA, rseqc, picard, preseq, samblaster, samtools, bamtools, bismark, hicup, salmon, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc
[2016-05-23 09:14:29,979] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /root/galaxy/database/tmp/tmpbM5r93
[2016-05-23 09:14:29,986] multiqc.modules.snpeff.snpeff                      [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2016-05-23 09:14:29,988] multiqc.modules.qualimap.qualimap                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:29,989] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:29,991] multiqc.modules.methylQA.methylQA                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,048] multiqc.modules.rseqc.rseqc                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,107] multiqc.modules.picard.picard                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,120] multiqc.modules.preseq.preseq                      [DEBUG  ]  Could not find any preseq data in ('multiqc_WDir',)
[2016-05-23 09:14:30,132] multiqc.modules.samblaster.samblaster              [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2016-05-23 09:14:30,157] multiqc.modules.samtools.samtools                  [INFO   ]  Found 1 reports
[2016-05-23 09:14:30,170] multiqc.modules.bamtools.bamtools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,173] multiqc.modules.bismark.bismark                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,175] multiqc.modules.hicup.hicup                        [DEBUG  ]  Could not find any HiCUP data in ('multiqc_WDir',)
[2016-05-23 09:14:30,177] multiqc.modules.salmon.salmon                      [DEBUG  ]  Could not find any Salmon data in ('multiqc_WDir',)
[2016-05-23 09:14:30,178] multiqc.modules.star.star                          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,180] multiqc.modules.tophat.tophat                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,193] multiqc.modules.bowtie2.bowtie2                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,205] multiqc.modules.bowtie1.bowtie1                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,218] multiqc.modules.cutadapt.cutadapt                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,230] multiqc.modules.trimmomatic.trimmomatic            [DEBUG  ]  Could not find any Trimmomatic data in ('multiqc_WDir',)
[2016-05-23 09:14:30,242] multiqc.modules.skewer.skewer                      [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2016-05-23 09:14:30,244] multiqc.modules.fastq_screen.fastq_screen          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,246] multiqc.modules.fastqc.fastqc                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 09:14:30,247] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2016-05-23 09:14:30,247] multiqc                                            [INFO   ]  Data        : multiqc_data
[2016-05-23 09:14:30,247] multiqc                                            [DEBUG  ]  Moving data file from '/root/galaxy/database/tmp/tmpbM5r93/multiqc_data/multiqc_general_stats.txt' to '/root/galaxy/database/jobs_directory/000/89/working/multiqc_data'
[2016-05-23 09:14:30,247] multiqc                                            [DEBUG  ]  Moving data file from '/root/galaxy/database/tmp/tmpbM5r93/multiqc_data/multiqc_samtools.txt' to '/root/galaxy/database/jobs_directory/000/89/working/multiqc_data'
[2016-05-23 09:14:30,247] multiqc                                            [DEBUG  ]  Moving data file from '/root/galaxy/database/tmp/tmpbM5r93/multiqc_data/multiqc_sources.txt' to '/root/galaxy/database/jobs_directory/000/89/working/multiqc_data'
[2016-05-23 09:14:30,322] multiqc                                            [INFO   ]  MultiQC complete