annotate test-data/log_fastqc_2.txt @ 5:a9b6ec207609 draft

planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit ce880f6f5360df9ab9db5a4cee47c403af35a21a-dirty

[2016-05-23 08:57:23,478] multiqc                                            [INFO   ]  This is MultiQC v0.6
[2016-05-23 08:57:23,478] multiqc                                            [DEBUG  ]  Command     : /root/dependencies/multiqc/0.6/cmonjeau/package_multiqc_0_6/021c59fc29be/bin/multiqc multiqc_WDir
[2016-05-23 08:57:23,478] multiqc                                            [DEBUG  ]  Working dir : /root/galaxy/database/jobs_directory/000/88/working
[2016-05-23 08:57:23,478] multiqc                                            [DEBUG  ]  Template    : default
[2016-05-23 08:57:23,478] multiqc                                            [DEBUG  ]  No MultiQC config found: /root/dependencies/multiqc/0.6/cmonjeau/package_multiqc_0_6/021c59fc29be/lib/python/multiqc-0.6-py2.7.egg/multiqc_config.yaml
[2016-05-23 08:57:23,479] multiqc                                            [DEBUG  ]  No MultiQC config found: /root/.multiqc_config.yaml
[2016-05-23 08:57:23,479] multiqc                                            [DEBUG  ]  No MultiQC config found: multiqc_config.yaml
[2016-05-23 08:57:23,642] multiqc                                            [INFO   ]  Searching 'multiqc_WDir'
[2016-05-23 08:57:23,642] multiqc                                            [DEBUG  ]  Analysing modules: snpeff, qualimap, featureCounts, methylQA, rseqc, picard, preseq, samblaster, samtools, bamtools, bismark, hicup, salmon, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc
[2016-05-23 08:57:23,642] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /root/galaxy/database/tmp/tmpNoiZ9V
[2016-05-23 08:57:23,648] multiqc.modules.snpeff.snpeff                      [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2016-05-23 08:57:23,650] multiqc.modules.qualimap.qualimap                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,652] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,653] multiqc.modules.methylQA.methylQA                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,678] multiqc.modules.rseqc.rseqc                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,706] multiqc.modules.picard.picard                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,712] multiqc.modules.preseq.preseq                      [DEBUG  ]  Could not find any preseq data in ('multiqc_WDir',)
[2016-05-23 08:57:23,719] multiqc.modules.samblaster.samblaster              [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2016-05-23 08:57:23,726] multiqc.modules.samtools.samtools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,733] multiqc.modules.bamtools.bamtools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,735] multiqc.modules.bismark.bismark                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,737] multiqc.modules.hicup.hicup                        [DEBUG  ]  Could not find any HiCUP data in ('multiqc_WDir',)
[2016-05-23 08:57:23,739] multiqc.modules.salmon.salmon                      [DEBUG  ]  Could not find any Salmon data in ('multiqc_WDir',)
[2016-05-23 08:57:23,741] multiqc.modules.star.star                          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,742] multiqc.modules.tophat.tophat                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,749] multiqc.modules.bowtie2.bowtie2                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,756] multiqc.modules.bowtie1.bowtie1                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,762] multiqc.modules.cutadapt.cutadapt                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,769] multiqc.modules.trimmomatic.trimmomatic            [DEBUG  ]  Could not find any Trimmomatic data in ('multiqc_WDir',)
[2016-05-23 08:57:23,776] multiqc.modules.skewer.skewer                      [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2016-05-23 08:57:23,777] multiqc.modules.fastq_screen.fastq_screen          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2016-05-23 08:57:23,842] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 2 reports
[2016-05-23 08:57:23,846] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2016-05-23 08:57:23,846] multiqc                                            [INFO   ]  Data        : multiqc_data
[2016-05-23 08:57:23,846] multiqc                                            [DEBUG  ]  Moving data file from '/root/galaxy/database/tmp/tmpNoiZ9V/multiqc_data/multiqc_fastqc.txt' to '/root/galaxy/database/jobs_directory/000/88/working/multiqc_data'
[2016-05-23 08:57:23,846] multiqc                                            [DEBUG  ]  Moving data file from '/root/galaxy/database/tmp/tmpNoiZ9V/multiqc_data/multiqc_general_stats.txt' to '/root/galaxy/database/jobs_directory/000/88/working/multiqc_data'
[2016-05-23 08:57:23,846] multiqc                                            [DEBUG  ]  Moving data file from '/root/galaxy/database/tmp/tmpNoiZ9V/multiqc_data/multiqc_sources.txt' to '/root/galaxy/database/jobs_directory/000/88/working/multiqc_data'
[2016-05-23 08:57:23,919] multiqc                                            [INFO   ]  MultiQC complete