annotate test-data/rnastar_log.txt @ 8:c503e1c1fbad draft

Uploaded
author engineson
date Thu, 25 May 2017 17:51:17 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
1 Started job on | Mar 01 15:53:05
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
2 Started mapping on | Mar 01 15:53:08
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
3 Finished on | Mar 01 15:53:08
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
4 Mapping speed, Million of reads per hour | inf
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
5
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
6 Number of input reads | 100
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
7 Average input read length | 75
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
8 UNIQUE READS:
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
9 Uniquely mapped reads number | 89
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
10 Uniquely mapped reads % | 89.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
11 Average mapped length | 74.80
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
12 Number of splices: Total | 47
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
13 Number of splices: Annotated (sjdb) | 0
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
14 Number of splices: GT/AG | 47
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
15 Number of splices: GC/AG | 0
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
16 Number of splices: AT/AC | 0
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
17 Number of splices: Non-canonical | 0
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
18 Mismatch rate per base, % | 1.73%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
19 Deletion rate per base | 0.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
20 Deletion average length | 0.00
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
21 Insertion rate per base | 0.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
22 Insertion average length | 0.00
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
23 MULTI-MAPPING READS:
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
24 Number of reads mapped to multiple loci | 1
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
25 % of reads mapped to multiple loci | 1.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
26 Number of reads mapped to too many loci | 0
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
27 % of reads mapped to too many loci | 0.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
28 UNMAPPED READS:
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
29 % of reads unmapped: too many mismatches | 0.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
30 % of reads unmapped: too short | 10.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
31 % of reads unmapped: other | 0.00%
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
32 CHIMERIC READS:
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
33 Number of chimeric reads | 0
c503e1c1fbad Uploaded
engineson
parents:
diff changeset
34 % of chimeric reads | 0.00%