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405
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420 <td class="content" colspan="3">Failed to load latest commit information.</td>
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426 <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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427 </td>
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429 <span class="css-truncate css-truncate-target"><a href="/EnginesOn/galaxy_tools/tree/master/tools/multiqc/test-data" class="js-navigation-open" id="24346e1b50066607059af36e3b684b24-d9caaf1ec3a328031511d03095390651c84395ae" title="test-data">test-data</a></span>
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442 <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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443 </td>
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444 <td class="content">
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445 <span class="css-truncate css-truncate-target"><a href="/EnginesOn/galaxy_tools/blob/master/tools/multiqc/.shed.yml" class="js-navigation-open" id="cdcc89357908fc034bde629890b000b5-4c9b723b6c2a4f7048d2ecc9c2cfbfd1420de34e" title=".shed.yml">.shed.yml</a></span>
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461 <span class="css-truncate css-truncate-target"><a href="/EnginesOn/galaxy_tools/blob/master/tools/multiqc/multiqc.xml" class="js-navigation-open" id="ceac84f815c5913530dc8530dac32e3d-88796a13a2b24cc1f65b4466d0d1c7d9ee39ba47" title="multiqc.xml">multiqc.xml</a></span>
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474 <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" />
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475 </td>
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477 <span class="css-truncate css-truncate-target"><a href="/EnginesOn/galaxy_tools/blob/master/tools/multiqc/readme.rst" class="js-navigation-open" id="4fca3e8b2a5097bd09e6e331b570ade8-74112b5ac8a7ac97a8157ec803ac35fa14b77663" title="readme.rst">readme.rst</a></span>
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478 </td>
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494 <div id="readme" class="readme boxed-group clearfix announce instapaper_body rst">
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495 <h3>
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496 <svg aria-hidden="true" class="octicon octicon-book" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M3 5h4v1H3V5zm0 3h4V7H3v1zm0 2h4V9H3v1zm11-5h-4v1h4V5zm0 2h-4v1h4V7zm0 2h-4v1h4V9zm2-6v9c0 .55-.45 1-1 1H9.5l-1 1-1-1H2c-.55 0-1-.45-1-1V3c0-.55.45-1 1-1h5.5l1 1 1-1H15c.55 0 1 .45 1 1zm-8 .5L7.5 3H2v9h6V3.5zm7-.5H9.5l-.5.5V12h6V3z"/></svg>
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497 readme.rst
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498 </h3>
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499
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500 <article class="markdown-body entry-content" itemprop="text"><a name="user-content-galaxy-multiqc-wrapper"></a>
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501 <h2><a id="user-content-galaxy-multiqc-wrapper" class="anchor" href="#galaxy-multiqc-wrapper" aria-hidden="true"><svg aria-hidden="true" class="octicon octicon-link" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Galaxy multiqc wrapper</h2>
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502 <p>Aggregate results from bioinformatics analyses across many samples into a single report</p>
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503 <p>MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.</p>
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504 <a name="user-content-installation"></a>
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505 <h2><a id="user-content-installation" class="anchor" href="#installation" aria-hidden="true"><svg aria-hidden="true" class="octicon octicon-link" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Installation</h2>
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506 <p>Requirements: pkg-config</p>
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507 <p>Conda recipe: A conda recipe exists in bioconda repository. If you have a recent Galaxy release, the packages installation is not mandatory.</p>
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508 <a name="user-content-multiqc-webpage"></a>
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509 <h2><a id="user-content-multiqc-webpage" class="anchor" href="#multiqc-webpage" aria-hidden="true"><svg aria-hidden="true" class="octicon octicon-link" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>MultiQC webpage</h2>
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510 <p>Important: For a good view of multiqc webpage, you need to deactivate the sanitize_all_html option in galaxy.ini</p>
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511 <blockquote>
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512 sanitize_all_html = False</blockquote>
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513 <a name="user-content-history"></a>
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514 <h2><a id="user-content-history" class="anchor" href="#history" aria-hidden="true"><svg aria-hidden="true" class="octicon octicon-link" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>History</h2>
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515 <blockquote>
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516 <ul>
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517 <li>v1.0.0.0 Update to multiQC 1.0, add additional supported tools</li>
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518 <li>v0.6: Initial public release</li>
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519 </ul>
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520 </blockquote>
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521 <a name="user-content-citation"></a>
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522 <h2><a id="user-content-citation" class="anchor" href="#citation" aria-hidden="true"><svg aria-hidden="true" class="octicon octicon-link" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Citation</h2>
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523 <p>Created by EnginesOn company</p>
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524
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