A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2017-05-24, 21:46 based on data in:
/tmp/tmpWNBij6/job_working_directory/000/32/working/multiqc_WDir
General Statistics
Showing 2/2 rows and 6/6 columns.Sample Name | Error rate | M Non-Primary | M Reads Mapped | % Mapped | M Total seqs | M Reads Mapped |
---|---|---|---|---|---|---|
samtools_flagstat | 20.7 | |||||
samtools_stats | 0.42% | 0.0 | 0.6 | 100.0% | 0.6 |
Samtools
Samtools is a suite of programs for interacting with high-throughput sequencing data.
Percent Mapped
Alignment metrics from samtools stats
; mapped vs. unmapped reads.
Alignment metrics
This module parses the output from samtools stats
. All numbers in millions.
Samtools Flagstat
This module parses the output from samtools flagstat
. All numbers in millions.