multiqc: test-data/fastqc_data

comparison test-data/fastqc_data_2.txt @ 0:8f25feb85166 draft

planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty

author	engineson
date	Fri, 27 May 2016 06:22:43 -0400
parents
children

comparison

equal deleted inserted replaced

--1:000000000000
+:8f25feb85166
+##FastQC	0.11.4
+>>Basic Statistics	pass
+#Measure	Value
+Filename	poulet5_2
+File type	Conventional base calls
+Encoding	Sanger / Illumina 1.9
+Total Sequences	267849
+Sequences flagged as poor quality	0
+Sequence length	101
+%GC	48
+>>END_MODULE
+>>Per base sequence quality	warn
+#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
+1	20.590586487162543	21.0	21.0	21.0	20.0	21.0
+2	20.458478471078855	21.0	19.0	22.0	19.0	22.0
+3	20.178608096352797	21.0	20.0	21.0	18.0	22.0
+4	22.495204387546714	23.0	22.0	24.0	20.0	24.0
+5	24.59397272343746	25.0	24.0	26.0	24.0	26.0
+6	25.77560491172265	26.0	25.0	27.0	25.0	27.0
+7	26.651378201897337	27.0	26.0	28.0	26.0	28.0
+8	27.54968284369178	28.0	27.0	29.0	26.0	29.0
+9	27.089005372429988	28.0	26.0	28.0	26.0	28.0
+10-11	27.058984726469017	28.0	26.0	28.0	25.5	28.0
+12-13	26.954911162632676	27.5	26.0	28.0	25.5	28.0
+14-15	27.066410552214123	28.0	26.0	28.0	26.0	28.0
+16-17	27.04552938409328	28.0	26.0	28.0	25.5	28.0
+18-19	27.025118630273028	28.0	26.0	28.0	25.0	28.0
+20-21	27.019042445557012	28.0	26.0	28.0	25.0	28.0
+22-23	27.010315513591614	28.0	26.0	28.0	25.0	28.0
+24-25	27.03931879529138	28.0	26.0	28.0	25.5	28.0
+26-27	26.978450544896567	28.0	26.0	28.0	25.0	28.0
+28-29	27.003714779595967	28.0	26.0	28.0	25.0	28.0
+30-31	27.025971722873706	28.0	26.0	28.0	25.0	28.0
+32-33	27.017791740868923	28.0	26.0	28.0	25.0	28.0
+34-35	27.00628899118533	28.0	26.0	28.0	25.0	28.0
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+38-39	27.034922661648913	28.0	26.0	28.0	25.5	28.0
+40-41	27.005346295860726	28.0	26.0	28.0	25.0	28.0
+42-43	27.000909094303132	28.0	26.0	28.0	25.0	28.0
+44-45	27.004913216028434	28.0	26.0	28.0	25.0	28.0
+46-47	26.979999925331065	28.0	26.0	28.0	25.0	28.0
+48-49	26.941037674211962	27.5	26.0	28.0	25.0	28.0
+50-51	26.99995146519121	27.5	26.0	28.0	25.5	28.0
+52-53	26.95084543903468	27.5	26.0	28.0	25.0	28.0
+54-55	26.97609847339359	28.0	26.0	28.0	25.0	28.0
+56-57	26.99262270906369	27.5	26.0	28.0	25.0	28.0
+58-59	26.942271578389317	27.0	26.0	28.0	25.0	28.0
+60-61	26.88024222603034	27.0	26.0	28.0	25.0	28.0
+62-63	26.866450873439888	27.0	26.0	28.0	25.0	28.0
+64-65	26.947610407356386	28.0	26.0	28.0	25.0	28.0
+66-67	26.975012040366025	28.0	26.5	28.0	25.0	28.5
+68-69	26.966286975124042	28.0	26.5	28.0	25.0	29.0
+70-71	26.917634562757375	28.0	26.0	28.0	25.0	29.0
+72-73	26.885127441207544	28.0	26.0	28.0	25.0	29.0
+74-75	26.846286527110426	28.0	26.5	28.0	25.0	29.0
+76-77	26.769134848366058	28.0	26.0	28.0	25.0	29.0
+78-79	26.709703975000842	28.0	26.5	28.0	25.0	29.0
+80-81	26.551336760637525	27.5	26.0	28.0	25.0	28.5
+82-83	26.42626069165836	27.5	26.0	28.0	25.0	28.5
+84-85	26.309463541024982	27.5	26.0	28.0	25.0	29.0
+86-87	26.127226534353312	27.5	26.0	28.0	25.0	29.0
+88-89	25.91885539987082	27.5	26.0	28.0	24.0	29.0
+90-91	25.674260497519125	27.0	26.0	28.0	23.5	29.0
+92-93	25.371903572535274	27.0	26.0	28.0	22.0	29.0
+94-95	24.758753999454918	27.0	26.0	28.0	20.5	28.5
+96-97	23.84710415196622	26.5	25.0	27.5	7.0	28.0
+98-99	22.40618968149965	25.5	24.0	26.5	2.0	27.0
+100-101	23.009550156991438	27.0	25.0	28.0	2.0	29.0
+>>END_MODULE
+>>Per tile sequence quality	pass
+#Tile	Base	Mean
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+2208	98-99	0.6138457594966518
+2208	100-101	0.5558034486475201
+>>END_MODULE
+>>Per sequence quality scores	warn
+#Quality	Count
+2	308.0
+3	0.0
+4	0.0
+5	2.0
+6	2.0
+7	5.0
+8	11.0
+9	19.0
+10	24.0
+11	37.0
+12	67.0
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+14	135.0
+15	215.0
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+17	551.0
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+19	1284.0
+20	1843.0
+21	2574.0
+22	3707.0
+23	5673.0
+24	9154.0
+25	18567.0
+26	152994.0
+27	69334.0
+>>END_MODULE
+>>Per base sequence content	fail
+#Base	G	A	T	C
+1	24.259742395586485	12.979270544437881	10.183447832489852	52.57753922748578
+2	18.617901052497956	21.439745518763136	40.641206097693015	19.30114733104589
+3	24.37754107724875	22.73930460819342	24.34692681324179	28.53622750131604
+4	24.41562223491594	30.088221348595663	20.10050438866675	25.395652027821647
+5	26.98610037745147	30.530261453281515	22.40926790841108	20.074370260855932
+6	21.71820690015643	32.48808097099485	23.803336954776757	21.990375174071957
+7	20.013888422208034	18.00865412975221	38.0975848332456	23.879872614794156
+8	20.609746536294704	21.85895784565184	29.885495185720313	27.645800432333147
+9	20.915142486998274	20.74116386471482	31.829127605479208	26.5145660428077
+10-11	24.97414588070144	29.204327811565474	22.19142128587376	23.630105021859332
+12-13	22.91160317940332	24.228949893410093	27.574118253194897	25.285328673991692
+14-15	23.741361737396815	25.36261102337511	26.722705703586726	24.17332153564135
+16-17	24.579147206075064	25.610138548211864	25.582884386352013	24.22782985936106
+18-19	24.019316853899024	25.60957853118735	25.727182106336034	24.643922508577596
+20-21	23.88827287016192	25.856546038999582	26.02679121445292	24.228389876385574
+22-23	23.961261755690707	26.122927470328435	25.75256954478083	24.163241229200032
+24-25	23.863818793424656	26.03985827835833	25.928974907503854	24.167348020713163
+26-27	23.84141811244395	26.16418205780122	26.033138074064116	23.961261755690707
+28-29	23.890326265918485	25.823318362211545	25.908814294621223	24.37754107724875
+30-31	23.84515155927407	25.788223962008445	25.969856150293637	24.39676832842385
+32-33	23.917393755436834	26.149621615163767	26.046018465628023	23.88696616377138
+34-35	24.097159220306963	26.049191895433623	25.611445254602405	24.24220362965701
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+38-39	23.9228072533405	25.979376439710432	26.10724699364194	23.990569313307127
+40-41	23.882672699916743	25.983296558882056	26.044338414554467	24.08969232664673
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+46-47	23.956034930128542	26.0038305164477	25.79867761313277	24.241456940290984
+48-49	23.8716590317679	25.95436234594865	25.834892047384905	24.339086574898545
+50-51	23.940727798125064	26.11900735115681	25.965562686439004	23.974702164279126
+52-53	23.85952532957002	26.227277309230203	25.698807910427146	24.214389450772636
+54-55	23.936621006611936	25.95342898424112	25.899480677545935	24.210469331601015
+56-57	24.102199373527622	25.939801903311192	26.084286295636723	23.873712427524463
+58-59	24.02267695604613	26.216823658105877	25.769370055516355	23.991129330331642
+60-61	23.884726095673308	26.040978312407365	25.961455894925873	24.112839696993454
+62-63	23.794563354725984	26.08801974246684	26.275252100997204	23.842164801809975
+64-65	23.963688496130285	26.01055072074191	25.83302532396985	24.19273545915796
+66-67	23.792323286627916	25.963135945999426	25.901534073302496	24.343006694070166
+68-69	23.88509944035632	26.06225895933903	26.086713036076297	23.965928564228353
+70-71	23.78392303126015	26.232877479475373	25.739315808533913	24.243883680730562
+72-73	23.80445698882579	26.11751397242476	25.980869818442482	24.097159220306963
+74-75	23.956781619494567	26.278238858461293	26.054418720995788	23.710560801048352
+76-77	23.885659457380836	26.073085955146368	25.85971946880519	24.181535118667608
+78-79	23.94035445344205	26.194236304783665	25.794384149278137	24.071025092496146
+80-81	23.81640401868217	26.158021870531527	26.12890098525662	23.896673125529684
+82-83	23.995467587087475	25.704269391092353	26.116256017860845	24.18400700395933
+84-85	23.760588988571918	25.9592158268278	26.086339691393285	24.193855493206993
+86-87	23.802261352966323	26.35799715137475	26.019186219075337	23.82055527658359
+88-89	24.123840280759396	26.200414418786984	25.7484739308182	23.927271369635424
+90-91	24.09603918625793	25.911801052085316	25.786170566251883	24.20598919540487
+92-93	23.827497890578915	26.454007153364245	25.948866139498072	23.769628816558768
+94-95	24.156707697247327	25.997670329178007	25.765076591661717	24.080545381912945
+96-97	24.214576123114142	26.079246142416064	25.670433714518254	24.03574401995154
+98-99	24.170334778177256	26.024551146354852	25.918147911696515	23.88696616377138
+100-101	24.662260557858183	25.864978902953588	25.310294611851685	24.162465927336545
+>>END_MODULE
+>>Per sequence GC content	pass
+#GC Content	Count
+0	0.0
+1	0.0
+2	0.0
+3	0.0
+4	0.0
+5	0.0
+6	0.0
+7	0.0
+8	0.0
+9	0.0
+10	0.0
+11	0.0
+12	0.0
+13	0.0
+14	0.5
+15	2.5
+16	5.0
+17	6.0
+18	9.5
+19	18.0
+20	26.0
+21	35.5
+22	46.0
+23	71.0
+24	130.0
+25	233.5
+26	389.5
+27	542.5
+28	724.5
+29	1063.0
+30	1433.0
+31	1683.5
+32	1996.0
+33	2367.5
+34	2840.5
+35	3318.0
+36	3924.5
+37	4721.0
+38	5510.0
+39	6259.0
+40	7364.0
+41	8736.0
+42	9608.5
+43	10256.0
+44	10928.5
+45	11153.5
+46	11271.5
+47	12042.0
+48	12804.5
+49	12874.0
+50	12482.5
+51	11758.0
+52	10827.0
+53	10433.0
+54	10615.0
+55	9955.0
+56	8760.0
+57	7986.5
+58	6982.5
+59	5802.5
+60	4913.5
+61	4177.5
+62	3751.5
+63	3282.0
+64	2533.0
+65	1954.0
+66	1513.0
+67	1247.5
+68	1102.0
+69	957.0
+70	777.0
+71	535.5
+72	361.5
+73	253.0
+74	157.0
+75	99.0
+76	60.0
+77	46.5
+78	37.0
+79	21.5
+80	13.5
+81	16.5
+82	19.5
+83	14.0
+84	6.5
+85	3.0
+86	0.5
+87	0.0
+88	0.0
+89	0.0
+90	0.0
+91	0.0
+92	0.0
+93	0.0
+94	0.0
+95	0.0
+96	0.0
+97	0.0
+98	0.0
+99	0.0
+100	0.0
+>>END_MODULE
+>>Per base N content	pass
+#Base	N-Count
+1	0.11461681768459094
+2	0.003733446830116969
+3	0.0
+4	0.0
+5	0.0
+6	0.0
+7	0.0
+8	0.0
+9	0.0
+10-11	0.0
+12-13	0.0
+14-15	0.0
+16-17	0.0
+18-19	0.0
+20-21	0.0
+22-23	0.0
+24-25	0.0
+26-27	0.0
+28-29	0.0
+30-31	0.0
+32-33	0.0
+34-35	0.0
+36-37	0.0
+38-39	0.0
+40-41	0.0
+42-43	0.0
+44-45	0.0
+46-47	0.0
+48-49	0.0
+50-51	0.0
+52-53	0.0
+54-55	0.0
+56-57	0.0
+58-59	0.0
+60-61	0.0
+62-63	0.0
+64-65	0.0
+66-67	0.0
+68-69	0.0
+70-71	0.0
+72-73	0.0
+74-75	0.0
+76-77	0.0
+78-79	0.0
+80-81	0.0
+82-83	1.8667234150584845E-4
+84-85	0.0
+86-87	1.8667234150584845E-4
+88-89	0.0014933787320467876
+90-91	0.0
+92-93	0.0011200340490350907
+94-95	0.0
+96-97	0.0
+98-99	0.0
+100-101	0.01456044263745618
+>>END_MODULE
+>>Sequence Length Distribution	pass
+#Length	Count
+101	267849.0
+>>END_MODULE
+>>Sequence Duplication Levels	warn
+#Total Deduplicated Percentage	63.826611251945884
+#Duplication Level	Percentage of deduplicated	Percentage of total
+1	81.66283073871745	52.122617512935754
+2	9.894108596885154	12.630148461958491
+3	3.18062640137576	6.090258145748586
+4	1.5566170090070461	3.974143548082379
+5	0.8538567368205473	2.7249391002950074
+6	0.5533319107768025	2.119038045746843
+7	0.3960736941041749	1.7696029190496514
+8	0.2698969625036296	1.3781286803040145
+9	0.23212846037984958	1.3334375701059644
+>10	1.3969694370078172	15.730893862039416
+>50	0.0035600524217624095	0.12679215373389083
+>100	0.0	0.0
+>500	0.0	0.0
+>1k	0.0	0.0
+>5k	0.0	0.0
+>10k+	0.0	0.0
+>>END_MODULE
+>>Overrepresented sequences	pass
+>>END_MODULE
+>>Adapter Content	pass
+#Position	Illumina Universal Adapter	Illumina Small RNA Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
+1	0.0	0.0	0.0	0.0
+2	0.0	0.0	0.0	0.0
+3	0.0	0.0	0.0	0.0
+4	0.0	0.0	0.0	0.0
+5	0.0	0.0	0.0	0.0
+6	0.0	0.0	0.0	0.0
+7	0.0	0.0	0.0	0.0
+8	0.0	0.0	0.0	0.0
+9	0.0	0.0	0.0	0.0
+10-11	0.0	0.0	0.0	0.0
+12-13	0.0	0.0	0.0	0.0
+14-15	0.0	0.0	0.0	0.0
+16-17	0.0	0.0	0.0	0.0
+18-19	0.0	0.0	0.0	0.0
+20-21	0.0	0.0	0.0	0.0
+22-23	0.0	0.0	0.0	0.0
+24-25	0.0	0.0	0.0	0.0
+26-27	0.0	0.0	0.0	0.0
+28-29	0.0	0.0	0.0	0.0
+30-31	0.0	0.0	0.0	0.0
+32-33	0.0	0.0	0.0	0.0
+34-35	0.0	0.0	0.0	0.0
+36-37	0.0	0.0	0.0	0.0
+38-39	0.0	0.0	0.0	0.0
+40-41	0.0	0.0	0.0	0.0
+42-43	0.0	0.0	0.0	0.0
+44-45	0.0	0.0	0.0	0.0
+46-47	0.0	0.0	0.0	0.0
+48-49	0.0	0.0	0.0	0.0
+50-51	0.0	0.0	0.0	0.0
+52-53	0.0	0.0	0.0	0.0
+54-55	0.0	0.0	0.0	0.0
+56-57	0.0	0.0	0.0	0.0
+58-59	0.0	0.0	0.0	0.0
+60-61	0.0	0.0	0.0	0.0
+62-63	0.0	0.0	0.0	0.0
+64-65	0.0	0.0	0.0	0.0
+66-67	0.0	0.0	0.0	0.0
+68-69	0.0	0.0	0.0	0.0
+70-71	0.0	0.0	0.0	0.0
+72-73	0.0	0.0	0.0	0.0
+74-75	0.0	0.0	0.0	0.0
+76-77	0.0	0.0	0.0	0.0
+78-79	0.0	0.0	0.0	0.0
+80-81	0.0	0.0	0.0	0.0
+82-83	0.0	0.0	0.0	0.0
+84-85	0.0	0.0	0.0	0.0
+86-87	0.0	0.0	0.0	0.0
+88-89	0.0	0.0	0.0	0.0
+>>END_MODULE
+>>Kmer Content	warn
+#Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
+TACGAGG	60	0.0039460836	31.665857	9
+CCCAGAT	105	6.861368E-5	27.157375	1
+AATCAAC	70	0.008381328	27.142164	5
+CTTGTAT	120	0.004739449	19.802252	1
+TCGCTCA	130	0.007549489	18.268764	2
+CCCCACT	195	0.0044338168	14.623201	1
+TTCAACA	295	0.005166332	11.270898	2
+CTTGAAG	305	0.006593838	10.90747	1
+>>END_MODULE

Mercurial > repos > engineson > multiqc

comparison test-data/fastqc_data_2.txt @ 0:8f25feb85166 draft