Mercurial > repos > engineson > multiqc
comparison test-data/log_all.txt @ 0:8f25feb85166 draft
planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty
| author | engineson |
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| date | Fri, 27 May 2016 06:22:43 -0400 |
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| children |
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| -1:000000000000 | 0:8f25feb85166 |
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| 1 [2016-05-23 10:05:37,586] multiqc [INFO ] This is MultiQC v0.6 | |
| 2 [2016-05-23 10:05:37,587] multiqc [DEBUG ] Command : /root/dependencies/multiqc/0.6/cmonjeau/package_multiqc_0_6/021c59fc29be/bin/multiqc multiqc_WDir | |
| 3 [2016-05-23 10:05:37,587] multiqc [DEBUG ] Working dir : /root/galaxy/database/jobs_directory/000/107/working | |
| 4 [2016-05-23 10:05:37,587] multiqc [DEBUG ] Template : default | |
| 5 [2016-05-23 10:05:37,587] multiqc [DEBUG ] No MultiQC config found: /root/dependencies/multiqc/0.6/cmonjeau/package_multiqc_0_6/021c59fc29be/lib/python/multiqc-0.6-py2.7.egg/multiqc_config.yaml | |
| 6 [2016-05-23 10:05:37,587] multiqc [DEBUG ] No MultiQC config found: /root/.multiqc_config.yaml | |
| 7 [2016-05-23 10:05:37,587] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml | |
| 8 [2016-05-23 10:05:37,744] multiqc [INFO ] Searching 'multiqc_WDir' | |
| 9 [2016-05-23 10:05:37,744] multiqc [DEBUG ] Analysing modules: snpeff, qualimap, featureCounts, methylQA, rseqc, picard, preseq, samblaster, samtools, bamtools, bismark, hicup, salmon, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc | |
| 10 [2016-05-23 10:05:37,744] multiqc [DEBUG ] Using temporary directory for creating report: /root/galaxy/database/tmp/tmpmeCIjG | |
| 11 [2016-05-23 10:05:37,752] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('multiqc_WDir',) | |
| 12 [2016-05-23 10:05:37,754] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 13 [2016-05-23 10:05:37,757] multiqc.modules.featureCounts.feature_counts [INFO ] Found 6 reports | |
| 14 [2016-05-23 10:05:37,760] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 15 [2016-05-23 10:05:37,839] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 16 [2016-05-23 10:05:37,987] multiqc.modules.picard.picard [INFO ] Found 1 dupMetrics reports | |
| 17 [2016-05-23 10:05:37,988] multiqc.modules.picard.picard [INFO ] Found 1 insertSize reports | |
| 18 [2016-05-23 10:05:37,993] multiqc.modules.picard.picard [INFO ] Found 1 GCbias reports | |
| 19 [2016-05-23 10:05:38,017] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('multiqc_WDir',) | |
| 20 [2016-05-23 10:05:38,042] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('multiqc_WDir',) | |
| 21 [2016-05-23 10:05:38,079] multiqc.modules.samtools.samtools [INFO ] Found 1 reports | |
| 22 [2016-05-23 10:05:38,104] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 23 [2016-05-23 10:05:38,111] multiqc.modules.bismark.bismark [INFO ] Found 1 bismark alignment reports | |
| 24 [2016-05-23 10:05:38,114] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('multiqc_WDir',) | |
| 25 [2016-05-23 10:05:38,116] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('multiqc_WDir',) | |
| 26 [2016-05-23 10:05:38,118] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 27 [2016-05-23 10:05:38,121] multiqc.modules.tophat.tophat [INFO ] Found 1 reports | |
| 28 [2016-05-23 10:05:38,146] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 29 [2016-05-23 10:05:38,170] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 30 [2016-05-23 10:05:38,196] multiqc.modules.cutadapt.cutadapt [INFO ] Found 1 reports | |
| 31 [2016-05-23 10:05:38,221] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('multiqc_WDir',) | |
| 32 [2016-05-23 10:05:38,244] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('multiqc_WDir',) | |
| 33 [2016-05-23 10:05:38,246] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 34 [2016-05-23 10:05:38,313] multiqc.modules.fastqc.fastqc [INFO ] Found 2 reports | |
| 35 [2016-05-23 10:05:38,318] multiqc [INFO ] Report : multiqc_report.html | |
| 36 [2016-05-23 10:05:38,318] multiqc [INFO ] Data : multiqc_data | |
| 37 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_fastqc.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 38 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_picard_dups.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 39 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_bismark_alignment.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 40 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_cutadapt.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 41 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_general_stats.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 42 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_samtools.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 43 [2016-05-23 10:05:38,319] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_picard_insertSize.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 44 [2016-05-23 10:05:38,320] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_sources.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 45 [2016-05-23 10:05:38,320] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_featureCounts.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 46 [2016-05-23 10:05:38,320] multiqc [DEBUG ] Moving data file from '/root/galaxy/database/tmp/tmpmeCIjG/multiqc_data/multiqc_tophat.txt.txt' to '/root/galaxy/database/jobs_directory/000/107/working/multiqc_data' | |
| 47 [2016-05-23 10:05:38,395] multiqc [INFO ] MultiQC complete |