Mercurial > repos > engineson > multiqc
comparison test-data/log_fastqc.txt @ 8:c503e1c1fbad draft
Uploaded
| author | engineson |
|---|---|
| date | Thu, 25 May 2017 17:51:17 -0400 |
| parents | |
| children |
comparison
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| 7:4612d775965f | 8:c503e1c1fbad |
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| 1 [2017-05-25 01:09:17,435] multiqc [DEBUG ] No MultiQC config found: /home/dpryan/miniconda2/lib/python2.7/site-packages/multiqc-1.0-py2.7.egg/multiqc_config.yaml | |
| 2 [2017-05-25 01:09:17,435] multiqc [DEBUG ] No MultiQC config found: /home/dpryan/.multiqc_config.yaml | |
| 3 [2017-05-25 01:09:17,435] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml | |
| 4 [2017-05-25 01:09:17,435] multiqc [DEBUG ] Command used: /home/dpryan/miniconda2/bin/multiqc multiqc_WDir | |
| 5 [2017-05-25 01:09:17,435] multiqc [DEBUG ] Could not connect to multiqc.info for version check | |
| 6 [2017-05-25 01:09:17,435] multiqc [INFO ] This is MultiQC v1.0 | |
| 7 [2017-05-25 01:09:17,435] multiqc [DEBUG ] Command : /home/dpryan/miniconda2/bin/multiqc multiqc_WDir | |
| 8 [2017-05-25 01:09:17,435] multiqc [DEBUG ] Working dir : /tmp/tmptvpHhR/job_working_directory/000/2/working | |
| 9 [2017-05-25 01:09:17,435] multiqc [INFO ] Template : default | |
| 10 [2017-05-25 01:09:17,436] multiqc [INFO ] Searching 'multiqc_WDir' | |
| 11 [2017-05-25 01:09:17,436] multiqc [DEBUG ] Analysing modules: custom_content, peddy, methylQA, qualimap, preseq, quast, rna_seqc, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, adapterRemoval, cutadapt, trimmomatic, skewer, sortmerna, fastq_screen, fastqc, clusterflow | |
| 12 [2017-05-25 01:09:17,436] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpExYq9v | |
| 13 [2017-05-25 01:09:17,570] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found | |
| 14 [2017-05-25 01:09:17,573] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 15 [2017-05-25 01:09:17,576] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 16 [2017-05-25 01:09:17,578] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 | |
| 17 [2017-05-25 01:09:17,579] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 18 [2017-05-25 01:09:17,581] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('multiqc_WDir',) | |
| 19 [2017-05-25 01:09:17,584] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 20 [2017-05-25 01:09:17,586] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('multiqc_WDir',) | |
| 21 [2017-05-25 01:09:17,589] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 22 [2017-05-25 01:09:17,591] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 23 [2017-05-25 01:09:17,594] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('multiqc_WDir',) | |
| 24 [2017-05-25 01:09:17,596] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('multiqc_WDir',) | |
| 25 [2017-05-25 01:09:17,598] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 26 [2017-05-25 01:09:17,601] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 27 [2017-05-25 01:09:17,603] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 28 [2017-05-25 01:09:17,606] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 29 [2017-05-25 01:09:17,609] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 30 [2017-05-25 01:09:17,611] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('multiqc_WDir',) | |
| 31 [2017-05-25 01:09:17,614] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('multiqc_WDir',) | |
| 32 [2017-05-25 01:09:17,617] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 33 [2017-05-25 01:09:17,619] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 34 [2017-05-25 01:09:17,621] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 35 [2017-05-25 01:09:17,624] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('multiqc_WDir',) | |
| 36 [2017-05-25 01:09:17,626] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('multiqc_WDir',) | |
| 37 [2017-05-25 01:09:17,629] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 38 [2017-05-25 01:09:17,631] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. | |
| 39 [2017-05-25 01:09:17,633] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 40 [2017-05-25 01:09:17,636] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 41 [2017-05-25 01:09:17,638] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 42 [2017-05-25 01:09:17,641] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 43 [2017-05-25 01:09:17,643] multiqc.modules.adapterRemoval.adapterRemoval [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 44 [2017-05-25 01:09:17,645] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 45 [2017-05-25 01:09:17,648] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('multiqc_WDir',) | |
| 46 [2017-05-25 01:09:17,650] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('multiqc_WDir',) | |
| 47 [2017-05-25 01:09:17,652] multiqc.modules.sortmerna.sortmerna [DEBUG ] Could not find any SortMeRNA data in ('multiqc_WDir',) | |
| 48 [2017-05-25 01:09:17,655] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 49 [2017-05-25 01:09:17,694] multiqc.modules.fastqc.fastqc [INFO ] Found 1 reports | |
| 50 [2017-05-25 01:09:17,748] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('multiqc_WDir',) | |
| 51 [2017-05-25 01:09:17,750] multiqc [INFO ] Compressing plot data | |
| 52 [2017-05-25 01:09:17,802] multiqc [INFO ] Report : multiqc_report.html | |
| 53 [2017-05-25 01:09:17,802] multiqc [INFO ] Data : multiqc_data | |
| 54 [2017-05-25 01:09:17,802] multiqc [DEBUG ] Moving data file from '/tmp/tmpExYq9v/multiqc_data/multiqc_general_stats.txt' to '/tmp/tmptvpHhR/job_working_directory/000/2/working/multiqc_data' | |
| 55 [2017-05-25 01:09:17,803] multiqc [DEBUG ] Moving data file from '/tmp/tmpExYq9v/multiqc_data/multiqc_fastqc.txt' to '/tmp/tmptvpHhR/job_working_directory/000/2/working/multiqc_data' | |
| 56 [2017-05-25 01:09:17,803] multiqc [DEBUG ] Moving data file from '/tmp/tmpExYq9v/multiqc_data/multiqc_sources.txt' to '/tmp/tmptvpHhR/job_working_directory/000/2/working/multiqc_data' | |
| 57 [2017-05-25 01:09:17,900] multiqc [INFO ] MultiQC complete |