diff test-data/MarkDuplicates_data.txt @ 0:8f25feb85166 draft

planemo upload for repository https://github.com/EnginesOn/galaxy_tools/tree/master/tools/multiqc commit 1110117e9b07da7913ea4480566a00d1bb373531-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/MarkDuplicates_data.txt	Fri May 27 06:22:43 2016 -0400
@@ -0,0 +1,112 @@
+## htsjdk.samtools.metrics.StringHeader
+# picard.sam.markduplicates.MarkDuplicates INPUT=[/omaha-beach/cloud_26/files/000/dataset_114.dat] OUTPUT=/omaha-beach/cloud_26/files/000/dataset_197.dat METRICS_FILE=/omaha-beach/cloud_26/files/000/dataset_196.dat REMOVE_DUPLICATES=false ASSUME_SORTED=true DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json
+## htsjdk.samtools.metrics.StringHeader
+# Started on: Mon May 23 09:32:41 UTC 2016
+
+## METRICS CLASS	picard.sam.DuplicationMetrics
+LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
+Unknown Library	2900	313405	0	2257	629	0	0.005582	77973949
+
+## HISTOGRAM	java.lang.Double
+BIN	VALUE
+1.0	1
+2.0	1.995989
+3.0	2.987982
+4.0	3.975997
+5.0	4.960048
+6.0	5.940152
+7.0	6.916324
+8.0	7.88858
+9.0	8.856937
+10.0	9.821409
+11.0	10.782013
+12.0	11.738763
+13.0	12.691676
+14.0	13.640766
+15.0	14.586049
+16.0	15.52754
+17.0	16.465254
+18.0	17.399207
+19.0	18.329414
+20.0	19.25589
+21.0	20.178649
+22.0	21.097706
+23.0	22.013077
+24.0	22.924776
+25.0	23.832819
+26.0	24.737218
+27.0	25.63799
+28.0	26.535149
+29.0	27.428709
+30.0	28.318684
+31.0	29.20509
+32.0	30.08794
+33.0	30.967248
+34.0	31.84303
+35.0	32.715298
+36.0	33.584068
+37.0	34.449352
+38.0	35.311166
+39.0	36.169523
+40.0	37.024436
+41.0	37.875921
+42.0	38.723989
+43.0	39.568656
+44.0	40.409935
+45.0	41.247839
+46.0	42.082382
+47.0	42.913578
+48.0	43.741439
+49.0	44.565979
+50.0	45.387212
+51.0	46.205151
+52.0	47.019809
+53.0	47.831199
+54.0	48.639334
+55.0	49.444228
+56.0	50.245893
+57.0	51.044342
+58.0	51.839588
+59.0	52.631645
+60.0	53.420524
+61.0	54.206239
+62.0	54.988802
+63.0	55.768226
+64.0	56.544524
+65.0	57.317707
+66.0	58.087789
+67.0	58.854783
+68.0	59.618699
+69.0	60.379551
+70.0	61.137352
+71.0	61.892112
+72.0	62.643845
+73.0	63.392562
+74.0	64.138276
+75.0	64.880999
+76.0	65.620743
+77.0	66.357519
+78.0	67.09134
+79.0	67.822217
+80.0	68.550163
+81.0	69.275188
+82.0	69.997306
+83.0	70.716526
+84.0	71.432862
+85.0	72.146324
+86.0	72.856924
+87.0	73.564674
+88.0	74.269585
+89.0	74.971668
+90.0	75.670935
+91.0	76.367397
+92.0	77.061066
+93.0	77.751952
+94.0	78.440066
+95.0	79.12542
+96.0	79.808025
+97.0	80.487892
+98.0	81.165032
+99.0	81.839456
+100.0	82.511174
+