diff test-data/samtools_flagstat.txt @ 8:c503e1c1fbad draft

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author engineson
date Thu, 25 May 2017 17:51:17 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_flagstat.txt	Thu May 25 17:51:17 2017 -0400
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+21040602 + 0 in total (QC-passed reads + QC-failed reads)
+0 + 0 secondary
+0 + 0 supplementary
+5448463 + 0 duplicates
+20689039 + 0 mapped (98.33%:-nan%)
+0 + 0 paired in sequencing
+0 + 0 read1
+0 + 0 read2
+0 + 0 properly paired (-nan%:-nan%)
+0 + 0 with itself and mate mapped
+0 + 0 singletons (-nan%:-nan%)
+0 + 0 with mate mapped to a different chr
+0 + 0 with mate mapped to a different chr (mapQ>=5)