Mercurial > repos > engineson > multiqc
diff test-data/samtools_stats.txt @ 8:c503e1c1fbad draft
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| author | engineson |
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| date | Thu, 25 May 2017 17:51:17 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/samtools_stats.txt Thu May 25 17:51:17 2017 -0400 @@ -0,0 +1,9736 @@ +# This file was produced by samtools stats (1.2+htslib-1.2.1) and can be plotted using plot-bamstats +# The command line was: stats --coverage 1,1000,1 --GC-depth 20000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 --ref-seq /omaha-beach/cloud_26/files/000/dataset_20.dat /omaha-beach/cloud_26/files/000/dataset_114.dat +# CHK, Checksum [2]Read Names [3]Sequences [4]Qualities +# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) +CHK 7742088d 2cf80e59 99341a6a +# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. +SN raw total sequences: 641821 +SN filtered sequences: 0 +SN sequences: 641821 +SN is sorted: 1 +SN 1st fragments: 320981 +SN last fragments: 320840 +SN reads mapped: 641821 +SN reads mapped and paired: 638746 # paired-end technology bit set + both mates mapped +SN reads unmapped: 0 +SN reads properly paired: 635626 # proper-pair bit set +SN reads paired: 641821 # paired-end technology bit set +SN reads duplicated: 0 # PCR or optical duplicate bit set +SN reads MQ0: 70 # mapped and MQ=0 +SN reads QC failed: 0 +SN non-primary alignments: 12111 +SN total length: 64823921 # ignores clipping +SN bases mapped: 64823921 # ignores clipping +SN bases mapped (cigar): 64823921 # more accurate +SN bases trimmed: 0 +SN bases duplicated: 0 +SN mismatches: 275405 # from NM fields +SN error rate: 4.248509e-03 # mismatches / bases mapped (cigar) +SN average length: 101 +SN maximum length: 101 +SN average quality: 26.0 +SN insert size average: 719.7 +SN insert size standard deviation: 1223.0 +SN inward oriented pairs: 317512 +SN outward oriented pairs: 1294 +SN pairs with other orientation: 30 +SN pairs on different chromosomes: 0 +# First Fragment Qualitites. Use `grep ^FFQ | cut -f 2-` to extract this part. +# Columns correspond to qualities and rows to cycles. First column is the cycle number. +FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 113 0 0 0 0 320725 143 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 4 320810 71 91 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 3 320877 25 75 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 5 320905 26 44 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 8 320816 67 86 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 8 320839 42 84 5 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 6 320867 57 47 1 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 8 320845 59 64 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 2 320851 46 78 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 320836 57 77 3 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 7 320849 46 67 5 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 8 320812 80 78 2 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 9 320826 56 82 4 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 0 0 0 10 320774 77 107 7 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 7 320808 60 95 3 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 1 0 0 0 12 320786 68 101 6 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 8 320758 89 116 6 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 9 320768 86 106 6 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 12 320795 77 91 4 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 11 320739 99 110 14 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 16 320681 115 143 21 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 11 320699 111 144 11 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 1 0 0 0 14 320659 111 171 15 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 11 1 0 0 0 18 320626 139 165 20 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 1 0 0 0 13 320630 125 180 23 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 1 0 0 1 32 320502 176 228 32 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 1 0 0 0 25 320413 219 270 43 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 40 320323 222 317 74 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 14 0 0 0 0 33 320324 240 300 68 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 32 320438 208 249 47 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 2 0 0 0 30 320518 136 220 63 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 2 0 0 0 22 320539 158 199 52 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 10 3 0 0 0 31 320501 143 234 58 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 14 5 0 0 0 28 320475 168 216 73 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 14 2 0 0 2 14 320498 164 217 65 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 7 0 0 0 25 320419 210 229 82 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 10 2 0 0 0 27 320497 146 216 79 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 15 2 0 0 0 35 320379 186 277 85 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 11 4 0 0 2 36 320412 186 271 58 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 4 0 0 0 31 320420 187 261 67 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 4 6 0 0 0 19 320375 205 268 92 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 9 2 0 0 0 34 320376 202 287 65 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 2 8 0 0 0 33 320367 206 289 68 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 4 13 0 0 2 41 320230 279 330 78 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 15 8 0 0 0 58 320276 209 341 68 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 13 8 0 0 0 53 320197 275 342 87 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 14 6 0 0 1 55 320225 219 388 67 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 11 9 0 0 0 53 320120 302 394 80 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 10 18 0 0 2 84 320118 260 419 63 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 10 12 0 0 0 60 319973 337 492 84 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 10 15 0 0 0 52 319932 333 537 90 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 5 18 0 0 0 61 319903 320 573 94 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 8 22 0 0 0 62 319897 359 544 78 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 14 25 0 0 0 89 319808 371 575 91 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 1 7 24 0 0 3 121 319810 320 633 57 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 4 42 0 0 0 66 319481 518 657 199 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 5 36 0 0 0 80 319309 575 777 183 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 7 40 0 0 0 79 319345 609 700 191 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 19 35 0 0 0 112 319419 487 785 110 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 9 54 0 0 0 88 319097 574 901 246 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 10 55 0 0 10 169 319174 475 997 74 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 7 75 0 0 0 111 318749 787 986 248 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 22 56 0 0 10 188 318870 589 1150 76 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 19 76 0 0 11 189 318737 648 1195 91 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 21 79 0 0 0 197 318550 705 1284 121 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 25 79 0 0 0 195 318333 783 1439 107 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 26 18 85 0 0 0 208 318101 829 1584 130 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 19 96 0 0 0 231 317865 961 1679 116 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 36 133 0 0 0 238 317621 994 1809 132 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 29 123 0 0 0 258 317369 1087 1947 143 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 32 0 123 0 0 109 316709 1180 1344 1464 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 35 0 133 0 0 125 316372 1317 1408 1576 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 0 34 138 0 0 7 406 316605 1310 2392 65 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27 31 181 0 0 0 342 316340 1442 2510 108 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 36 187 0 0 8 395 316006 1568 2662 95 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 22 54 179 0 0 0 386 315780 1618 2865 77 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 46 206 0 0 11 436 315719 1579 2889 72 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 38 0 236 0 11 125 314395 1803 1935 2415 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 33 249 0 0 0 490 315017 1824 3294 60 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19 42 285 0 0 8 548 314760 1875 3393 51 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 47 289 0 0 9 585 314291 2036 3653 55 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 2 46 359 0 0 14 604 313542 2274 4102 24 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 17 42 363 0 0 28 773 312837 2442 4461 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 61 357 0 0 22 706 312428 2610 4730 50 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 16 45 386 0 0 21 839 311516 2872 5269 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 27 57 431 0 0 31 937 310762 3053 5665 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 19 50 507 0 0 16 1056 309721 3328 6266 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 26 56 554 0 0 12 1030 309021 3568 6694 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 18 35 604 0 0 36 1137 308241 3708 7186 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 12 41 672 0 0 10 1127 307003 4124 7976 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 20 56 744 0 0 15 1358 305669 4425 8679 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 16 71 854 0 0 10 1290 304360 4896 9472 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 52 22 943 0 0 13 1582 302737 5311 10315 1 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 38 13 1011 0 0 13 1659 301116 5731 11394 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 48 1119 0 0 2 1835 299128 6219 12604 20 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 21 1338 0 0 0 1858 6469 296623 13924 730 12 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 8 1383 0 0 0 1987 6972 294224 15758 636 11 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 3 0 1574 0 0 6 2448 8066 291197 17253 422 6 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1610 2 0 0 2835 8983 8498 298741 142 169 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1699 0 0 0 3197 10141 285195 20749 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1758 0 0 0 3382 281089 11576 23176 0 0 0 0 0 0 0 0 0 0 0 0 0 +FFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +# Last Fragment Qualitites. Use `grep ^LFQ | cut -f 2-` to extract this part. +# Columns correspond to qualities and rows to cycles. First column is the cycle number. +LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 0 0 0 0 0 319823 972 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 15 0 0 0 5 320305 160 321 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 20 320305 132 370 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 6 0 0 17 320360 134 308 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 22 320335 165 301 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 20 320442 112 243 18 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 30 320503 109 179 9 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 7 320490 131 197 9 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12 320539 123 159 2 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 11 320465 112 240 4 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 1 0 0 0 27 320344 160 278 10 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 25 320389 169 236 10 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 14 320331 166 308 8 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 3 0 0 0 24 320389 142 250 22 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 1 0 0 0 23 320394 156 236 15 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 30 320296 190 295 16 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 16 1 0 0 0 36 320300 198 269 19 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 32 320348 176 253 21 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 25 320363 163 250 26 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 1 0 0 0 39 320215 196 348 32 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 25 320265 187 327 23 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 36 320227 192 334 33 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 13 0 0 0 0 38 320161 240 349 38 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 2 0 0 0 41 320111 237 400 34 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 4 0 0 0 39 320085 261 392 48 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 1 0 0 0 34 320076 240 426 54 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 16 0 0 0 0 35 319993 298 427 68 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 14 1 0 0 0 42 319952 300 452 75 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 18 2 0 0 0 58 320012 286 377 83 0 0 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0 0 0 0 6 14 5 0 0 0 46 320016 258 387 108 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 19 14 0 0 4 68 319787 318 497 130 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 7 8 0 0 0 46 319976 278 397 123 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 15 7 0 0 1 51 319947 287 430 93 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 12 8 0 0 2 68 319889 291 486 76 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 1 8 13 0 0 3 72 319747 351 503 131 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 11 16 0 0 3 91 319807 302 533 74 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 14 12 0 0 4 101 319743 327 538 97 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 1 13 14 0 0 1 78 319747 337 546 90 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 7 12 0 0 0 75 319710 365 550 113 0 0 0 0 0 0 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1208 0 0 10 2042 297077 6923 13475 19 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 33 31 1338 0 0 13 2162 294534 7554 15153 16 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 27 1558 0 0 0 2210 7901 291792 16495 836 18 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 15 1627 0 0 0 2458 8586 288861 18599 681 10 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 1851 9 0 0 2912 9641 9013 296492 435 468 7 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 1919 1 0 0 3335 11040 10164 294027 177 171 2 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2077 0 0 0 3829 12449 278167 24318 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2027 0 0 0 3852 274224 14024 26713 0 0 0 0 0 0 0 0 0 0 0 0 0 +LFQ 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +# Mismatches per cycle and quality. Use `grep ^MPC | cut -f 2-` to extract this part. +# Columns correspond to qualities, rows to cycles. First column is the cycle number, second +# is the number of N's and the rest is the number of mismatches +MPC 1 157 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98405 282 0 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 2 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 2 83677 42 82 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 6 82286 28 70 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 2 82418 21 68 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 7 81217 31 82 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 6 81340 32 62 5 0 0 0 0 0 0 0 0 0 0 0 +MPC 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 6 81247 27 39 2 0 0 0 0 0 0 0 0 0 0 0 +MPC 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 4 81087 40 50 3 0 0 0 0 0 0 0 0 0 0 0 +MPC 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 2 79830 37 46 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 10 0 0 0 0 0 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0 0 0 85 84135 412 599 101 0 0 0 0 0 0 0 0 0 0 0 +MPC 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 6 36 0 0 0 89 84584 409 665 43 0 0 0 0 0 0 0 0 0 0 0 +MPC 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 15 15 10 0 0 60 84237 450 528 301 0 0 0 0 0 0 0 0 0 0 0 +MPC 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 8 17 16 0 0 75 82936 493 605 299 0 0 0 0 0 0 0 0 0 0 0 +MPC 73 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 17 44 0 0 2 157 84054 528 844 22 0 0 0 0 0 0 0 0 0 0 0 +MPC 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 12 54 0 0 0 96 83448 556 848 43 0 0 0 0 0 0 0 0 0 0 0 +MPC 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 8 31 33 0 1 97 83325 652 739 350 0 0 0 0 0 0 0 0 0 0 0 +MPC 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 19 34 0 0 0 130 82830 678 946 40 0 0 0 0 0 0 0 0 0 0 0 +MPC 77 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 13 41 0 0 0 143 82891 633 981 19 0 0 0 0 0 0 0 0 0 0 0 +MPC 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 13 43 27 0 2 100 82562 693 858 401 0 0 0 0 0 0 0 0 0 0 0 +MPC 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 16 82 0 0 3 163 82688 729 1061 25 0 0 0 0 0 0 0 0 0 0 0 +MPC 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 16 71 0 0 2 175 82962 828 1165 25 0 0 0 0 0 0 0 0 0 0 0 +MPC 81 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 3 17 74 0 0 8 231 82689 870 1289 15 0 0 0 0 0 0 0 0 0 0 0 +MPC 82 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 17 111 0 0 13 216 82308 966 1392 13 0 0 0 0 0 0 0 0 0 0 0 +MPC 83 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 25 99 0 0 9 267 81839 1044 1442 5 0 0 0 0 0 0 0 0 0 0 0 +MPC 84 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 20 85 0 0 1 232 81465 1231 1663 7 0 0 0 0 0 0 0 0 0 0 0 +MPC 85 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 4 17 99 0 0 10 268 81759 1291 1819 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 6 19 117 0 0 10 316 81327 1341 1988 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 87 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 3 19 117 0 0 4 349 81046 1483 2232 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 88 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 25 159 0 0 7 363 80978 1554 2285 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 89 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 4 25 182 0 0 9 338 80443 1644 2682 2 0 0 0 0 0 0 0 0 0 0 0 +MPC 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 17 214 0 0 4 430 79591 1772 2930 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 7 17 208 0 0 11 441 80129 1730 3233 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 5 17 211 0 0 3 446 78437 2002 3480 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 14 8 254 0 0 7 572 78615 1997 3749 3 0 0 0 0 0 0 0 0 0 0 0 +MPC 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 5 8 251 0 0 1 462 77866 2241 4048 6 0 0 0 0 0 0 0 0 0 0 0 +MPC 95 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 9 314 0 0 6 655 76430 2514 4695 7 0 0 0 0 0 0 0 0 0 0 0 +MPC 96 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 12 391 0 0 0 566 2098 76969 5222 211 4 0 0 0 0 0 0 0 0 0 0 0 +MPC 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 401 0 0 0 614 2396 75564 5776 229 6 0 0 0 0 0 0 0 0 0 0 0 +MPC 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 271 219 0 0 406 1727 2800 77304 3035 141 1 0 0 0 0 0 0 0 0 0 0 0 +MPC 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 504 0 0 0 928 2885 3413 78669 64 44 1 0 0 0 0 0 0 0 0 0 0 0 +MPC 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 536 0 0 0 979 3339 73408 7776 0 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 101 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 728 0 0 0 1072 73777 4856 10378 0 0 0 0 0 0 0 0 0 0 0 0 +MPC 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 +# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. +GCF 7.29 0 +GCF 15.08 2 +GCF 16.08 3 +GCF 17.09 7 +GCF 18.59 17 +GCF 20.10 33 +GCF 21.11 42 +GCF 22.11 52 +GCF 23.12 114 +GCF 24.12 164 +GCF 25.13 326 +GCF 26.13 507 +GCF 27.14 691 +GCF 28.14 899 +GCF 29.15 1591 +GCF 30.15 1949 +GCF 31.16 2308 +GCF 32.16 2736 +GCF 32.91 3088 +GCF 33.67 3685 +GCF 34.67 4605 +GCF 35.68 5091 +GCF 36.68 6131 +GCF 37.69 6883 +GCF 38.69 7964 +GCF 39.70 8636 +GCF 40.70 10761 +GCF 41.71 12194 +GCF 42.71 12911 +GCF 43.72 13386 +GCF 44.72 13260 +GCF 45.73 13698 +GCF 46.73 13439 +GCF 47.74 15308 +GCF 48.74 14928 +GCF 49.75 14412 +GCF 50.75 13332 +GCF 51.76 12903 +GCF 52.76 11945 +GCF 53.77 12084 +GCF 54.77 11708 +GCF 55.78 9649 +GCF 56.78 9361 +GCF 57.79 8367 +GCF 58.79 6859 +GCF 59.80 5753 +GCF 60.80 4662 +GCF 61.81 4213 +GCF 62.81 3894 +GCF 63.82 3063 +GCF 64.82 2456 +GCF 65.83 1920 +GCF 66.58 1398 +GCF 67.34 1419 +GCF 68.34 1253 +GCF 69.35 963 +GCF 70.35 713 +GCF 71.36 414 +GCF 72.36 265 +GCF 73.37 187 +GCF 74.37 115 +GCF 75.38 74 +GCF 76.38 50 +GCF 77.39 32 +GCF 78.39 23 +GCF 79.90 14 +GCF 81.41 19 +GCF 82.41 13 +GCF 83.42 5 +GCF 84.42 2 +GCF 85.43 1 +# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. +GCL 6.78 0 +GCL 14.57 1 +GCL 16.08 3 +GCL 17.09 4 +GCL 18.09 7 +GCL 19.10 14 +GCL 20.10 31 +GCL 21.11 43 +GCL 22.11 65 +GCL 23.12 110 +GCL 24.12 186 +GCL 25.13 318 +GCL 26.13 565 +GCL 27.14 698 +GCL 28.14 919 +GCL 29.15 1512 +GCL 30.15 1962 +GCL 31.16 2348 +GCL 32.16 2693 +GCL 32.91 3148 +GCL 33.67 3657 +GCL 34.67 4472 +GCL 35.68 5072 +GCL 36.68 5943 +GCL 37.69 6932 +GCL 38.69 7875 +GCL 39.70 8778 +GCL 40.70 10644 +GCL 41.71 11773 +GCL 42.71 12979 +GCL 43.72 13566 +GCL 44.72 13217 +GCL 45.73 13362 +GCL 46.73 13338 +GCL 47.74 15116 +GCL 48.74 14791 +GCL 49.75 14361 +GCL 50.75 13389 +GCL 51.76 12939 +GCL 52.76 12428 +GCL 53.77 12023 +GCL 54.77 11736 +GCL 55.78 9713 +GCL 56.78 9335 +GCL 57.79 8514 +GCL 58.79 6846 +GCL 59.80 5874 +GCL 60.80 4865 +GCL 61.81 4274 +GCL 62.81 3973 +GCL 63.82 3008 +GCL 64.82 2400 +GCL 65.83 1929 +GCL 66.58 1438 +GCL 67.34 1428 +GCL 68.34 1299 +GCL 69.35 988 +GCL 70.35 739 +GCL 71.36 392 +GCL 72.36 258 +GCL 73.37 156 +GCL 74.37 118 +GCL 75.38 81 +GCL 76.38 51 +GCL 77.39 28 +GCL 78.39 32 +GCL 79.40 25 +GCL 80.40 21 +GCL 81.41 12 +GCL 82.41 14 +GCL 83.92 4 +GCL 85.43 2 +# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%] +GCC 1 12.32 37.19 37.45 13.05 +GCC 2 30.22 19.07 19.01 31.70 +GCC 3 23.59 25.79 25.71 24.90 +GCC 4 24.89 24.36 24.80 25.95 +GCC 5 26.37 23.14 23.40 27.09 +GCC 6 27.80 21.60 21.70 28.90 +GCC 7 27.71 21.52 21.77 29.00 +GCC 8 25.01 24.21 24.68 26.10 +GCC 9 25.54 23.74 23.93 26.79 +GCC 10 27.83 21.53 21.61 29.03 +GCC 11 22.59 26.73 26.96 23.72 +GCC 12 24.80 24.68 24.80 25.72 +GCC 13 26.25 23.19 22.90 27.66 +GCC 14 25.68 23.77 23.72 26.83 +GCC 15 25.57 23.95 23.87 26.61 +GCC 16 25.07 24.41 24.49 26.03 +GCC 17 25.26 24.27 24.24 26.23 +GCC 18 25.39 24.07 23.99 26.55 +GCC 19 25.14 24.57 24.36 25.93 +GCC 20 25.54 23.86 23.89 26.71 +GCC 21 25.45 23.91 24.04 26.60 +GCC 22 25.38 23.88 24.40 26.34 +GCC 23 25.68 23.61 24.05 26.65 +GCC 24 25.78 23.77 23.42 27.03 +GCC 25 25.33 24.02 24.16 26.49 +GCC 26 25.76 23.85 23.76 26.63 +GCC 27 25.79 23.86 23.85 26.50 +GCC 28 25.39 24.28 24.11 26.23 +GCC 29 25.76 24.03 23.60 26.62 +GCC 30 25.85 23.95 23.84 26.35 +GCC 31 25.55 24.04 24.10 26.31 +GCC 32 25.91 23.72 23.70 26.66 +GCC 33 25.71 23.88 23.80 26.62 +GCC 34 25.47 24.24 24.41 25.87 +GCC 35 25.73 23.66 23.83 26.78 +GCC 36 25.56 23.78 23.97 26.69 +GCC 37 25.71 24.17 23.94 26.18 +GCC 38 25.76 23.66 23.92 26.66 +GCC 39 25.66 23.95 23.94 26.45 +GCC 40 25.54 24.12 24.01 26.33 +GCC 41 25.47 23.92 23.71 26.90 +GCC 42 25.78 23.69 23.74 26.79 +GCC 43 25.41 24.09 24.14 26.36 +GCC 44 25.94 23.70 23.59 26.77 +GCC 45 25.84 23.84 23.78 26.54 +GCC 46 25.47 24.14 24.07 26.32 +GCC 47 25.69 23.93 23.94 26.44 +GCC 48 25.71 24.00 23.78 26.51 +GCC 49 25.25 23.94 24.25 26.57 +GCC 50 25.78 23.80 23.68 26.74 +GCC 51 25.46 23.99 23.90 26.66 +GCC 52 25.32 23.97 24.09 26.62 +GCC 53 25.76 23.74 23.72 26.79 +GCC 54 25.69 23.87 23.88 26.55 +GCC 55 25.34 24.00 24.22 26.44 +GCC 56 25.68 23.94 23.77 26.61 +GCC 57 25.68 23.82 23.92 26.57 +GCC 58 25.74 23.69 24.16 26.41 +GCC 59 25.69 23.87 23.83 26.61 +GCC 60 25.83 23.70 23.85 26.63 +GCC 61 25.57 23.87 24.19 26.37 +GCC 62 25.87 23.75 23.88 26.51 +GCC 63 26.09 23.89 23.56 26.46 +GCC 64 25.68 24.31 23.96 26.06 +GCC 65 25.74 24.02 23.86 26.38 +GCC 66 25.73 23.92 23.70 26.65 +GCC 67 25.44 24.05 24.26 26.26 +GCC 68 25.76 23.92 23.83 26.49 +GCC 69 25.58 23.96 23.74 26.72 +GCC 70 25.91 23.86 24.02 26.21 +GCC 71 25.93 23.70 23.76 26.61 +GCC 72 25.95 23.42 23.76 26.87 +GCC 73 25.36 24.10 24.11 26.42 +GCC 74 25.91 23.79 23.67 26.64 +GCC 75 25.67 23.81 23.92 26.59 +GCC 76 25.79 23.88 24.29 26.05 +GCC 77 25.80 23.81 23.66 26.74 +GCC 78 26.11 23.71 23.57 26.61 +GCC 79 25.69 24.25 23.89 26.17 +GCC 80 25.79 23.81 23.80 26.60 +GCC 81 25.91 23.89 23.56 26.64 +GCC 82 25.47 23.98 23.96 26.59 +GCC 83 25.76 23.85 23.90 26.49 +GCC 84 26.10 23.65 23.62 26.63 +GCC 85 25.35 24.06 24.19 26.39 +GCC 86 26.07 23.85 23.69 26.39 +GCC 87 26.02 23.96 23.45 26.57 +GCC 88 25.63 24.31 23.85 26.20 +GCC 89 25.89 23.88 23.55 26.69 +GCC 90 25.81 24.05 23.77 26.37 +GCC 91 25.36 24.23 24.29 26.12 +GCC 92 25.90 23.55 23.90 26.65 +GCC 93 25.85 23.76 23.75 26.65 +GCC 94 25.50 24.35 24.15 26.00 +GCC 95 25.77 23.83 23.88 26.52 +GCC 96 25.71 23.78 23.88 26.62 +GCC 97 25.67 24.09 24.05 26.19 +GCC 98 25.81 23.71 23.97 26.51 +GCC 99 25.43 23.88 24.11 26.58 +GCC 100 25.46 23.99 24.27 26.28 +GCC 101 25.52 24.12 24.24 26.11 +# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs +IS 0 0 0 0 0 +IS 1 0 0 0 0 +IS 2 0 0 0 0 +IS 3 0 0 0 0 +IS 4 0 0 0 0 +IS 5 0 0 0 0 +IS 6 0 0 0 0 +IS 7 0 0 0 0 +IS 8 0 0 0 0 +IS 9 0 0 0 0 +IS 10 0 0 0 0 +IS 11 0 0 0 0 +IS 12 0 0 0 0 +IS 13 0 0 0 0 +IS 14 0 0 0 0 +IS 15 0 0 0 0 +IS 16 0 0 0 0 +IS 17 0 0 0 0 +IS 18 0 0 0 0 +IS 19 0 0 0 0 +IS 20 0 0 0 0 +IS 21 0 0 0 0 +IS 22 0 0 0 0 +IS 23 0 0 0 0 +IS 24 0 0 0 0 +IS 25 0 0 0 0 +IS 26 0 0 0 0 +IS 27 0 0 0 0 +IS 28 0 0 0 0 +IS 29 0 0 0 0 +IS 30 0 0 0 0 +IS 31 0 0 0 0 +IS 32 0 0 0 0 +IS 33 0 0 0 0 +IS 34 0 0 0 0 +IS 35 0 0 0 0 +IS 36 0 0 0 0 +IS 37 0 0 0 0 +IS 38 0 0 0 0 +IS 39 0 0 0 0 +IS 40 0 0 0 0 +IS 41 0 0 0 0 +IS 42 0 0 0 0 +IS 43 0 0 0 0 +IS 44 0 0 0 0 +IS 45 0 0 0 0 +IS 46 0 0 0 0 +IS 47 0 0 0 0 +IS 48 0 0 0 0 +IS 49 0 0 0 0 +IS 50 0 0 0 0 +IS 51 0 0 0 0 +IS 52 0 0 0 0 +IS 53 0 0 0 0 +IS 54 0 0 0 0 +IS 55 0 0 0 0 +IS 56 0 0 0 0 +IS 57 0 0 0 0 +IS 58 0 0 0 0 +IS 59 0 0 0 0 +IS 60 0 0 0 0 +IS 61 0 0 0 0 +IS 62 0 0 0 0 +IS 63 0 0 0 0 +IS 64 0 0 0 0 +IS 65 0 0 0 0 +IS 66 0 0 0 0 +IS 67 0 0 0 0 +IS 68 0 0 0 0 +IS 69 0 0 0 0 +IS 70 0 0 0 0 +IS 71 0 0 0 0 +IS 72 0 0 0 0 +IS 73 0 0 0 0 +IS 74 0 0 0 0 +IS 75 0 0 0 0 +IS 76 0 0 0 0 +IS 77 0 0 0 0 +IS 78 0 0 0 0 +IS 79 0 0 0 0 +IS 80 0 0 0 0 +IS 81 0 0 0 0 +IS 82 0 0 0 0 +IS 83 0 0 0 0 +IS 84 0 0 0 0 +IS 85 0 0 0 0 +IS 86 0 0 0 0 +IS 87 0 0 0 0 +IS 88 0 0 0 0 +IS 89 0 0 0 0 +IS 90 0 0 0 0 +IS 91 0 0 0 0 +IS 92 0 0 0 0 +IS 93 0 0 0 0 +IS 94 0 0 0 0 +IS 95 0 0 0 0 +IS 96 0 0 0 0 +IS 97 0 0 0 0 +IS 98 0 0 0 0 +IS 99 0 0 0 0 +IS 100 0 0 0 0 +IS 101 5 4 1 0 +IS 102 537 308 229 0 +IS 103 481 296 185 0 +IS 104 401 345 56 0 +IS 105 348 332 16 0 +IS 106 367 358 9 0 +IS 107 346 346 0 0 +IS 108 356 356 0 0 +IS 109 391 391 0 0 +IS 110 349 349 0 0 +IS 111 368 368 0 0 +IS 112 452 452 0 0 +IS 113 461 461 0 0 +IS 114 474 474 0 0 +IS 115 515 515 0 0 +IS 116 481 481 0 0 +IS 117 521 521 0 0 +IS 118 561 561 0 0 +IS 119 601 601 0 0 +IS 120 605 605 0 0 +IS 121 605 605 0 0 +IS 122 702 702 0 0 +IS 123 707 707 0 0 +IS 124 658 658 0 0 +IS 125 755 755 0 0 +IS 126 738 738 0 0 +IS 127 761 761 0 0 +IS 128 828 828 0 0 +IS 129 884 884 0 0 +IS 130 929 929 0 0 +IS 131 935 935 0 0 +IS 132 957 957 0 0 +IS 133 1008 1008 0 0 +IS 134 1091 1091 0 0 +IS 135 1138 1138 0 0 +IS 136 1183 1183 0 0 +IS 137 1285 1285 0 0 +IS 138 1387 1387 0 0 +IS 139 1430 1430 0 0 +IS 140 1500 1500 0 0 +IS 141 1630 1630 0 0 +IS 142 1701 1701 0 0 +IS 143 1848 1848 0 0 +IS 144 1908 1908 0 0 +IS 145 1969 1969 0 0 +IS 146 2217 2217 0 0 +IS 147 2223 2223 0 0 +IS 148 2284 2284 0 0 +IS 149 2464 2464 0 0 +IS 150 2580 2580 0 0 +IS 151 2545 2545 0 0 +IS 152 2644 2644 0 0 +IS 153 2605 2605 0 0 +IS 154 2592 2592 0 0 +IS 155 2759 2759 0 0 +IS 156 2770 2770 0 0 +IS 157 2732 2732 0 0 +IS 158 2781 2781 0 0 +IS 159 2796 2796 0 0 +IS 160 2897 2897 0 0 +IS 161 2839 2839 0 0 +IS 162 2795 2795 0 0 +IS 163 2726 2726 0 0 +IS 164 2790 2790 0 0 +IS 165 2868 2868 0 0 +IS 166 2815 2815 0 0 +IS 167 2874 2874 0 0 +IS 168 2908 2908 0 0 +IS 169 2826 2826 0 0 +IS 170 2856 2856 0 0 +IS 171 2827 2827 0 0 +IS 172 2857 2857 0 0 +IS 173 2864 2863 0 1 +IS 174 2785 2785 0 0 +IS 175 2695 2695 0 0 +IS 176 2713 2713 0 0 +IS 177 2594 2594 0 0 +IS 178 2525 2525 0 0 +IS 179 2584 2584 0 0 +IS 180 2505 2505 0 0 +IS 181 2379 2378 1 0 +IS 182 2330 2330 0 0 +IS 183 2195 2195 0 0 +IS 184 2121 2121 0 0 +IS 185 2002 2001 0 1 +IS 186 1921 1921 0 0 +IS 187 1839 1839 0 0 +IS 188 1891 1891 0 0 +IS 189 1711 1711 0 0 +IS 190 1618 1618 0 0 +IS 191 1489 1489 0 0 +IS 192 1489 1489 0 0 +IS 193 1363 1363 0 0 +IS 194 1295 1295 0 0 +IS 195 1181 1181 0 0 +IS 196 1156 1154 2 0 +IS 197 1020 1018 2 0 +IS 198 982 981 1 0 +IS 199 901 893 8 0 +IS 200 817 816 1 0 +IS 201 720 717 3 0 +IS 202 703 703 0 0 +IS 203 617 617 0 0 +IS 204 508 508 0 0 +IS 205 503 503 0 0 +IS 206 429 429 0 0 +IS 207 379 379 0 0 +IS 208 352 349 3 0 +IS 209 304 304 0 0 +IS 210 288 288 0 0 +IS 211 182 182 0 0 +IS 212 205 204 1 0 +IS 213 178 178 0 0 +IS 214 166 166 0 0 +IS 215 138 138 0 0 +IS 216 131 131 0 0 +IS 217 94 93 1 0 +IS 218 89 88 1 0 +IS 219 93 92 1 0 +IS 220 82 81 1 0 +IS 221 67 67 0 0 +IS 222 66 66 0 0 +IS 223 59 58 1 0 +IS 224 80 78 2 0 +IS 225 69 69 0 0 +IS 226 70 70 0 0 +IS 227 72 72 0 0 +IS 228 75 74 1 0 +IS 229 84 83 1 0 +IS 230 77 77 0 0 +IS 231 88 87 1 0 +IS 232 103 103 0 0 +IS 233 113 112 1 0 +IS 234 81 80 1 0 +IS 235 97 97 0 0 +IS 236 117 116 1 0 +IS 237 106 105 1 0 +IS 238 114 113 1 0 +IS 239 112 111 1 0 +IS 240 143 142 1 0 +IS 241 149 145 4 0 +IS 242 140 138 2 0 +IS 243 136 135 1 0 +IS 244 151 149 2 0 +IS 245 142 140 2 0 +IS 246 145 143 2 0 +IS 247 154 152 2 0 +IS 248 168 166 2 0 +IS 249 162 161 1 0 +IS 250 149 147 2 0 +IS 251 178 177 1 0 +IS 252 156 155 1 0 +IS 253 186 183 3 0 +IS 254 191 189 2 0 +IS 255 193 190 3 0 +IS 256 196 192 4 0 +IS 257 190 185 5 0 +IS 258 193 191 2 0 +IS 259 191 188 3 0 +IS 260 201 201 0 0 +IS 261 205 204 1 0 +IS 262 206 201 5 0 +IS 263 190 185 5 0 +IS 264 212 211 1 0 +IS 265 202 196 6 0 +IS 266 222 218 4 0 +IS 267 227 222 5 0 +IS 268 216 212 4 0 +IS 269 199 196 3 0 +IS 270 193 191 2 0 +IS 271 196 192 4 0 +IS 272 204 200 4 0 +IS 273 196 192 4 0 +IS 274 224 221 3 0 +IS 275 213 210 3 0 +IS 276 187 184 3 0 +IS 277 215 215 0 0 +IS 278 198 198 0 0 +IS 279 209 207 2 0 +IS 280 187 184 3 0 +IS 281 184 182 2 0 +IS 282 183 180 3 0 +IS 283 175 175 0 0 +IS 284 182 181 1 0 +IS 285 175 171 4 0 +IS 286 178 175 3 0 +IS 287 190 186 4 0 +IS 288 195 188 7 0 +IS 289 200 198 2 0 +IS 290 150 146 4 0 +IS 291 169 166 3 0 +IS 292 186 183 3 0 +IS 293 182 178 4 0 +IS 294 142 138 4 0 +IS 295 160 155 5 0 +IS 296 143 141 2 0 +IS 297 152 148 4 0 +IS 298 146 145 1 0 +IS 299 149 147 2 0 +IS 300 125 125 0 0 +IS 301 130 128 2 0 +IS 302 120 117 3 0 +IS 303 110 106 4 0 +IS 304 121 119 2 0 +IS 305 117 117 0 0 +IS 306 124 123 1 0 +IS 307 131 131 0 0 +IS 308 115 114 1 0 +IS 309 100 99 1 0 +IS 310 99 99 0 0 +IS 311 109 109 0 0 +IS 312 98 98 0 0 +IS 313 104 101 3 0 +IS 314 110 109 1 0 +IS 315 84 83 1 0 +IS 316 90 89 1 0 +IS 317 85 85 0 0 +IS 318 95 95 0 0 +IS 319 80 80 0 0 +IS 320 88 88 0 0 +IS 321 93 93 0 0 +IS 322 97 97 0 0 +IS 323 87 87 0 0 +IS 324 97 97 0 0 +IS 325 89 89 0 0 +IS 326 105 105 0 0 +IS 327 101 101 0 0 +IS 328 96 96 0 0 +IS 329 242 242 0 0 +IS 330 105 105 0 0 +IS 331 80 80 0 0 +IS 332 94 94 0 0 +IS 333 84 84 0 0 +IS 334 116 116 0 0 +IS 335 108 108 0 0 +IS 336 100 100 0 0 +IS 337 102 102 0 0 +IS 338 113 112 1 0 +IS 339 96 96 0 0 +IS 340 131 131 0 0 +IS 341 105 105 0 0 +IS 342 111 111 0 0 +IS 343 107 107 0 0 +IS 344 110 110 0 0 +IS 345 117 117 0 0 +IS 346 102 102 0 0 +IS 347 114 114 0 0 +IS 348 99 99 0 0 +IS 349 118 118 0 0 +IS 350 102 102 0 0 +IS 351 104 104 0 0 +IS 352 117 117 0 0 +IS 353 124 124 0 0 +IS 354 108 108 0 0 +IS 355 111 111 0 0 +IS 356 93 93 0 0 +IS 357 133 133 0 0 +IS 358 115 115 0 0 +IS 359 132 132 0 0 +IS 360 132 132 0 0 +IS 361 127 127 0 0 +IS 362 129 129 0 0 +IS 363 104 104 0 0 +IS 364 121 121 0 0 +IS 365 118 118 0 0 +IS 366 104 104 0 0 +IS 367 118 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7587 0 0 0 0 +IS 7588 0 0 0 0 +IS 7589 2 2 0 0 +IS 7590 0 0 0 0 +IS 7591 0 0 0 0 +IS 7592 0 0 0 0 +IS 7593 2 2 0 0 +IS 7594 0 0 0 0 +IS 7595 1 1 0 0 +IS 7596 0 0 0 0 +IS 7597 0 0 0 0 +IS 7598 2 2 0 0 +IS 7599 0 0 0 0 +IS 7600 0 0 0 0 +IS 7601 2 2 0 0 +IS 7602 0 0 0 0 +IS 7603 0 0 0 0 +IS 7604 0 0 0 0 +IS 7605 0 0 0 0 +IS 7606 2 2 0 0 +IS 7607 0 0 0 0 +IS 7608 0 0 0 0 +IS 7609 1 1 0 0 +IS 7610 0 0 0 0 +IS 7611 2 2 0 0 +IS 7612 0 0 0 0 +IS 7613 0 0 0 0 +IS 7614 0 0 0 0 +IS 7615 1 1 0 0 +IS 7616 0 0 0 0 +IS 7617 0 0 0 0 +IS 7618 0 0 0 0 +IS 7619 1 1 0 0 +IS 7620 0 0 0 0 +IS 7621 1 1 0 0 +IS 7622 1 1 0 0 +IS 7623 0 0 0 0 +IS 7624 2 2 0 0 +IS 7625 0 0 0 0 +IS 7626 0 0 0 0 +IS 7627 1 1 0 0 +IS 7628 1 1 0 0 +IS 7629 0 0 0 0 +IS 7630 1 1 0 0 +IS 7631 0 0 0 0 +IS 7632 0 0 0 0 +IS 7633 0 0 0 0 +IS 7634 0 0 0 0 +IS 7635 0 0 0 0 +IS 7636 0 0 0 0 +IS 7637 0 0 0 0 +IS 7638 0 0 0 0 +IS 7639 0 0 0 0 +IS 7640 0 0 0 0 +IS 7641 0 0 0 0 +IS 7642 0 0 0 0 +IS 7643 0 0 0 0 +IS 7644 0 0 0 0 +IS 7645 0 0 0 0 +IS 7646 0 0 0 0 +IS 7647 0 0 0 0 +IS 7648 0 0 0 0 +IS 7649 0 0 0 0 +IS 7650 0 0 0 0 +IS 7651 0 0 0 0 +IS 7652 0 0 0 0 +IS 7653 0 0 0 0 +IS 7654 0 0 0 0 +IS 7655 0 0 0 0 +IS 7656 0 0 0 0 +IS 7657 1 1 0 0 +IS 7658 1 1 0 0 +IS 7659 0 0 0 0 +IS 7660 0 0 0 0 +IS 7661 2 2 0 0 +IS 7662 0 0 0 0 +IS 7663 0 0 0 0 +IS 7664 0 0 0 0 +IS 7665 0 0 0 0 +IS 7666 0 0 0 0 +IS 7667 0 0 0 0 +IS 7668 0 0 0 0 +IS 7669 0 0 0 0 +IS 7670 0 0 0 0 +IS 7671 0 0 0 0 +IS 7672 0 0 0 0 +IS 7673 0 0 0 0 +IS 7674 0 0 0 0 +IS 7675 0 0 0 0 +IS 7676 1 1 0 0 +IS 7677 0 0 0 0 +IS 7678 0 0 0 0 +IS 7679 0 0 0 0 +IS 7680 0 0 0 0 +IS 7681 0 0 0 0 +IS 7682 0 0 0 0 +IS 7683 0 0 0 0 +IS 7684 0 0 0 0 +IS 7685 0 0 0 0 +IS 7686 0 0 0 0 +IS 7687 0 0 0 0 +IS 7688 1 1 0 0 +IS 7689 0 0 0 0 +IS 7690 0 0 0 0 +IS 7691 0 0 0 0 +IS 7692 0 0 0 0 +IS 7693 0 0 0 0 +IS 7694 0 0 0 0 +IS 7695 0 0 0 0 +IS 7696 1 1 0 0 +IS 7697 1 1 0 0 +IS 7698 0 0 0 0 +IS 7699 0 0 0 0 +IS 7700 1 1 0 0 +IS 7701 1 1 0 0 +IS 7702 1 1 0 0 +IS 7703 0 0 0 0 +IS 7704 0 0 0 0 +IS 7705 0 0 0 0 +IS 7706 0 0 0 0 +IS 7707 0 0 0 0 +IS 7708 0 0 0 0 +IS 7709 0 0 0 0 +IS 7710 0 0 0 0 +IS 7711 0 0 0 0 +IS 7712 0 0 0 0 +IS 7713 0 0 0 0 +IS 7714 0 0 0 0 +IS 7715 0 0 0 0 +IS 7716 0 0 0 0 +IS 7717 0 0 0 0 +IS 7718 0 0 0 0 +IS 7719 0 0 0 0 +IS 7720 0 0 0 0 +IS 7721 0 0 0 0 +IS 7722 0 0 0 0 +IS 7723 0 0 0 0 +IS 7724 0 0 0 0 +IS 7725 0 0 0 0 +IS 7726 0 0 0 0 +IS 7727 0 0 0 0 +IS 7728 0 0 0 0 +IS 7729 0 0 0 0 +IS 7730 0 0 0 0 +IS 7731 0 0 0 0 +IS 7732 0 0 0 0 +IS 7733 0 0 0 0 +IS 7734 0 0 0 0 +IS 7735 0 0 0 0 +IS 7736 0 0 0 0 +IS 7737 0 0 0 0 +IS 7738 0 0 0 0 +IS 7739 0 0 0 0 +IS 7740 2 1 1 0 +IS 7741 1 0 1 0 +IS 7742 4 4 0 0 +IS 7743 0 0 0 0 +IS 7744 2 2 0 0 +IS 7745 1 1 0 0 +IS 7746 0 0 0 0 +IS 7747 1 1 0 0 +IS 7748 2 2 0 0 +IS 7749 0 0 0 0 +IS 7750 1 1 0 0 +IS 7751 0 0 0 0 +IS 7752 1 1 0 0 +IS 7753 1 1 0 0 +IS 7754 0 0 0 0 +IS 7755 1 1 0 0 +IS 7756 1 1 0 0 +IS 7757 3 3 0 0 +IS 7758 1 1 0 0 +IS 7759 1 1 0 0 +IS 7760 2 2 0 0 +IS 7761 0 0 0 0 +IS 7762 3 3 0 0 +IS 7763 1 1 0 0 +IS 7764 3 3 0 0 +IS 7765 3 3 0 0 +IS 7766 2 2 0 0 +IS 7767 3 3 0 0 +IS 7768 1 1 0 0 +IS 7769 4 4 0 0 +IS 7770 2 2 0 0 +IS 7771 2 2 0 0 +IS 7772 3 3 0 0 +IS 7773 4 4 0 0 +IS 7774 4 4 0 0 +IS 7775 1 1 0 0 +IS 7776 3 3 0 0 +IS 7777 4 4 0 0 +IS 7778 3 3 0 0 +IS 7779 4 4 0 0 +IS 7780 9 9 0 0 +IS 7781 8 8 0 0 +IS 7782 8 8 0 0 +IS 7783 7 7 0 0 +IS 7784 6 6 0 0 +IS 7785 11 11 0 0 +IS 7786 8 8 0 0 +IS 7787 7 7 0 0 +IS 7788 10 10 0 0 +IS 7789 9 9 0 0 +IS 7790 8 8 0 0 +IS 7791 10 10 0 0 +IS 7792 7 7 0 0 +IS 7793 11 11 0 0 +IS 7794 11 11 0 0 +IS 7795 11 11 0 0 +IS 7796 14 14 0 0 +IS 7797 11 11 0 0 +IS 7798 9 9 0 0 +IS 7799 12 12 0 0 +IS 7800 14 14 0 0 +IS 7801 13 13 0 0 +IS 7802 14 14 0 0 +IS 7803 13 13 0 0 +IS 7804 13 13 0 0 +IS 7805 12 12 0 0 +IS 7806 12 12 0 0 +IS 7807 9 9 0 0 +IS 7808 13 13 0 0 +IS 7809 12 12 0 0 +IS 7810 10 10 0 0 +IS 7811 14 14 0 0 +IS 7812 15 15 0 0 +IS 7813 13 13 0 0 +IS 7814 10 10 0 0 +IS 7815 12 12 0 0 +IS 7816 8 8 0 0 +IS 7817 6 6 0 0 +IS 7818 11 11 0 0 +IS 7819 8 8 0 0 +IS 7820 10 10 0 0 +IS 7821 8 8 0 0 +IS 7822 12 12 0 0 +IS 7823 9 9 0 0 +IS 7824 8 8 0 0 +IS 7825 8 8 0 0 +IS 7826 5 5 0 0 +IS 7827 10 10 0 0 +IS 7828 7 7 0 0 +IS 7829 7 7 0 0 +IS 7830 9 9 0 0 +IS 7831 4 4 0 0 +IS 7832 5 5 0 0 +IS 7833 4 4 0 0 +IS 7834 6 6 0 0 +IS 7835 4 4 0 0 +IS 7836 3 3 0 0 +IS 7837 5 5 0 0 +IS 7838 6 6 0 0 +IS 7839 6 6 0 0 +IS 7840 4 4 0 0 +IS 7841 1 1 0 0 +IS 7842 0 0 0 0 +IS 7843 0 0 0 0 +IS 7844 1 1 0 0 +IS 7845 2 2 0 0 +IS 7846 1 1 0 0 +IS 7847 2 2 0 0 +IS 7848 0 0 0 0 +IS 7849 1 1 0 0 +IS 7850 0 0 0 0 +IS 7851 0 0 0 0 +IS 7852 0 0 0 0 +IS 7853 0 0 0 0 +IS 7854 0 0 0 0 +IS 7855 0 0 0 0 +IS 7856 0 0 0 0 +IS 7857 0 0 0 0 +IS 7858 0 0 0 0 +IS 7859 0 0 0 0 +IS 7860 1 1 0 0 +IS 7861 1 1 0 0 +IS 7862 1 1 0 0 +IS 7863 0 0 0 0 +IS 7864 0 0 0 0 +IS 7865 0 0 0 0 +IS 7866 0 0 0 0 +IS 7867 1 1 0 0 +IS 7868 0 0 0 0 +IS 7869 0 0 0 0 +IS 7870 1 1 0 0 +IS 7871 0 0 0 0 +IS 7872 0 0 0 0 +IS 7873 1 1 0 0 +IS 7874 0 0 0 0 +IS 7875 0 0 0 0 +IS 7876 0 0 0 0 +IS 7877 0 0 0 0 +IS 7878 1 1 0 0 +IS 7879 0 0 0 0 +IS 7880 0 0 0 0 +IS 7881 0 0 0 0 +IS 7882 0 0 0 0 +IS 7883 0 0 0 0 +IS 7884 0 0 0 0 +IS 7885 0 0 0 0 +IS 7886 0 0 0 0 +IS 7887 0 0 0 0 +IS 7888 0 0 0 0 +IS 7889 1 1 0 0 +IS 7890 0 0 0 0 +IS 7891 0 0 0 0 +IS 7892 1 1 0 0 +IS 7893 0 0 0 0 +IS 7894 1 1 0 0 +IS 7895 0 0 0 0 +IS 7896 1 1 0 0 +IS 7897 0 0 0 0 +IS 7898 1 1 0 0 +IS 7899 0 0 0 0 +IS 7900 0 0 0 0 +IS 7901 0 0 0 0 +IS 7902 0 0 0 0 +IS 7903 0 0 0 0 +IS 7904 1 1 0 0 +IS 7905 0 0 0 0 +IS 7906 0 0 0 0 +IS 7907 0 0 0 0 +IS 7908 0 0 0 0 +IS 7909 0 0 0 0 +IS 7910 0 0 0 0 +IS 7911 0 0 0 0 +IS 7912 0 0 0 0 +IS 7913 0 0 0 0 +IS 7914 0 0 0 0 +IS 7915 0 0 0 0 +IS 7916 0 0 0 0 +IS 7917 0 0 0 0 +IS 7918 0 0 0 0 +IS 7919 0 0 0 0 +IS 7920 0 0 0 0 +IS 7921 0 0 0 0 +IS 7922 0 0 0 0 +IS 7923 0 0 0 0 +IS 7924 0 0 0 0 +IS 7925 0 0 0 0 +IS 7926 0 0 0 0 +IS 7927 0 0 0 0 +IS 7928 0 0 0 0 +IS 7929 0 0 0 0 +IS 7930 0 0 0 0 +IS 7931 0 0 0 0 +IS 7932 0 0 0 0 +IS 7933 0 0 0 0 +IS 7934 0 0 0 0 +IS 7935 0 0 0 0 +IS 7936 0 0 0 0 +IS 7937 0 0 0 0 +IS 7938 0 0 0 0 +IS 7939 0 0 0 0 +IS 7940 0 0 0 0 +IS 7941 0 0 0 0 +IS 7942 0 0 0 0 +IS 7943 0 0 0 0 +IS 7944 1 1 0 0 +IS 7945 0 0 0 0 +IS 7946 0 0 0 0 +IS 7947 0 0 0 0 +IS 7948 0 0 0 0 +IS 7949 0 0 0 0 +IS 7950 0 0 0 0 +IS 7951 0 0 0 0 +IS 7952 0 0 0 0 +IS 7953 0 0 0 0 +IS 7954 0 0 0 0 +IS 7955 0 0 0 0 +IS 7956 0 0 0 0 +IS 7957 0 0 0 0 +IS 7958 0 0 0 0 +IS 7959 1 1 0 0 +IS 7960 1 1 0 0 +IS 7961 0 0 0 0 +IS 7962 0 0 0 0 +IS 7963 0 0 0 0 +IS 7964 0 0 0 0 +IS 7965 0 0 0 0 +IS 7966 0 0 0 0 +IS 7967 0 0 0 0 +IS 7968 0 0 0 0 +IS 7969 1 1 0 0 +IS 7970 0 0 0 0 +IS 7971 0 0 0 0 +IS 7972 0 0 0 0 +IS 7973 0 0 0 0 +IS 7974 0 0 0 0 +IS 7975 0 0 0 0 +IS 7976 0 0 0 0 +IS 7977 1 1 0 0 +IS 7978 0 0 0 0 +IS 7979 0 0 0 0 +IS 7980 0 0 0 0 +IS 7981 0 0 0 0 +IS 7982 0 0 0 0 +IS 7983 0 0 0 0 +IS 7984 0 0 0 0 +IS 7985 1 1 0 0 +IS 7986 0 0 0 0 +IS 7987 0 0 0 0 +IS 7988 1 1 0 0 +IS 7989 0 0 0 0 +IS 7990 0 0 0 0 +IS 7991 1 1 0 0 +IS 7992 0 0 0 0 +IS 7993 1 1 0 0 +IS 7994 1 1 0 0 +IS 7995 0 0 0 0 +IS 7996 0 0 0 0 +IS 7997 0 0 0 0 +IS 7998 2 2 0 0 +IS 7999 3573 3553 11 9 +# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count +RL 101 641821 +# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions +ID 1 4895 3362 +ID 2 826 512 +# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) +IC 2 0 3 0 0 +IC 3 8 9 2 2 +IC 4 14 13 33 36 +IC 5 58 65 31 35 +IC 6 58 67 19 20 +IC 7 31 30 14 13 +IC 8 32 32 12 13 +IC 9 27 41 15 13 +IC 10 15 21 25 17 +IC 11 29 24 27 22 +IC 12 20 18 19 18 +IC 13 31 23 29 21 +IC 14 25 32 15 16 +IC 15 33 29 22 20 +IC 16 24 15 23 23 +IC 17 24 20 25 22 +IC 18 27 30 20 35 +IC 19 30 39 35 47 +IC 20 30 25 38 22 +IC 21 36 29 30 25 +IC 22 31 23 26 24 +IC 23 25 43 32 29 +IC 24 31 35 20 19 +IC 25 30 33 17 13 +IC 26 39 28 16 15 +IC 27 50 56 24 18 +IC 28 31 26 10 17 +IC 29 34 31 21 20 +IC 30 26 28 25 19 +IC 31 27 27 22 20 +IC 32 28 37 20 22 +IC 33 24 24 25 10 +IC 34 22 32 24 23 +IC 35 36 25 19 15 +IC 36 26 23 15 29 +IC 37 15 20 30 29 +IC 38 25 32 18 21 +IC 39 20 23 25 24 +IC 40 31 47 26 21 +IC 41 23 29 29 29 +IC 42 27 24 16 17 +IC 43 25 29 21 29 +IC 44 27 32 19 13 +IC 45 36 40 19 26 +IC 46 24 29 21 24 +IC 47 33 28 16 14 +IC 48 41 38 10 16 +IC 49 32 39 22 24 +IC 50 34 29 18 15 +IC 51 15 21 31 28 +IC 52 40 37 28 13 +IC 53 26 21 24 19 +IC 54 20 21 12 22 +IC 55 29 28 17 21 +IC 56 22 20 13 15 +IC 57 23 15 33 30 +IC 58 28 23 19 19 +IC 59 43 39 21 20 +IC 60 38 39 20 21 +IC 61 25 23 21 24 +IC 62 29 21 15 18 +IC 63 39 25 17 14 +IC 64 27 23 11 17 +IC 65 20 35 26 31 +IC 66 23 30 24 13 +IC 67 35 29 22 29 +IC 68 20 24 21 27 +IC 69 28 27 21 14 +IC 70 41 28 21 13 +IC 71 36 35 15 22 +IC 72 25 24 15 18 +IC 73 15 27 18 15 +IC 74 24 27 22 19 +IC 75 28 38 18 22 +IC 76 29 46 24 16 +IC 77 28 48 22 14 +IC 78 23 21 15 28 +IC 79 30 34 26 23 +IC 80 34 30 29 19 +IC 81 31 32 14 17 +IC 82 33 28 20 15 +IC 83 37 20 28 9 +IC 84 27 26 19 12 +IC 85 31 25 16 14 +IC 86 22 26 14 13 +IC 87 30 23 20 23 +IC 88 33 24 8 13 +IC 89 31 26 17 24 +IC 90 34 30 11 19 +IC 91 34 17 16 17 +IC 92 29 29 14 16 +IC 93 23 29 9 9 +IC 94 18 40 13 18 +IC 95 28 48 18 12 +IC 96 42 49 26 27 +IC 97 48 64 36 35 +IC 98 25 28 1 1 +IC 99 10 9 0 0 +# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. +COV [1-1] 1 639227 +COV [2-2] 2 385861 +COV [3-3] 3 200311 +COV [4-4] 4 140538 +COV [5-5] 5 100920 +COV [6-6] 6 78198 +COV [7-7] 7 63261 +COV [8-8] 8 53571 +COV [9-9] 9 45160 +COV [10-10] 10 40242 +COV [11-11] 11 35638 +COV [12-12] 12 32108 +COV [13-13] 13 28874 +COV [14-14] 14 26269 +COV [15-15] 15 24346 +COV [16-16] 16 22055 +COV [17-17] 17 19763 +COV [18-18] 18 18165 +COV [19-19] 19 17543 +COV [20-20] 20 16315 +COV [21-21] 21 16254 +COV [22-22] 22 14587 +COV [23-23] 23 13217 +COV [24-24] 24 12790 +COV [25-25] 25 12207 +COV [26-26] 26 11415 +COV [27-27] 27 10704 +COV [28-28] 28 9967 +COV [29-29] 29 9972 +COV [30-30] 30 9503 +COV [31-31] 31 9486 +COV [32-32] 32 8859 +COV [33-33] 33 8810 +COV [34-34] 34 8445 +COV [35-35] 35 7811 +COV [36-36] 36 7790 +COV [37-37] 37 7349 +COV [38-38] 38 7298 +COV [39-39] 39 6735 +COV [40-40] 40 6474 +COV [41-41] 41 6543 +COV [42-42] 42 6136 +COV [43-43] 43 6119 +COV [44-44] 44 5783 +COV [45-45] 45 5411 +COV [46-46] 46 5548 +COV [47-47] 47 5121 +COV [48-48] 48 5074 +COV [49-49] 49 4915 +COV [50-50] 50 4760 +COV [51-51] 51 4813 +COV [52-52] 52 4591 +COV [53-53] 53 4309 +COV [54-54] 54 3935 +COV [55-55] 55 4026 +COV [56-56] 56 3923 +COV [57-57] 57 3709 +COV [58-58] 58 3561 +COV [59-59] 59 3609 +COV [60-60] 60 3413 +COV [61-61] 61 3414 +COV [62-62] 62 3233 +COV [63-63] 63 3285 +COV [64-64] 64 3172 +COV [65-65] 65 3188 +COV [66-66] 66 2992 +COV [67-67] 67 2840 +COV [68-68] 68 3046 +COV [69-69] 69 2891 +COV [70-70] 70 2646 +COV [71-71] 71 2584 +COV [72-72] 72 2724 +COV [73-73] 73 2563 +COV [74-74] 74 2439 +COV [75-75] 75 2286 +COV [76-76] 76 2219 +COV [77-77] 77 2212 +COV [78-78] 78 2172 +COV [79-79] 79 2027 +COV [80-80] 80 1978 +COV [81-81] 81 2120 +COV [82-82] 82 2141 +COV [83-83] 83 1983 +COV [84-84] 84 2075 +COV [85-85] 85 1855 +COV [86-86] 86 1761 +COV [87-87] 87 1824 +COV [88-88] 88 1805 +COV [89-89] 89 1663 +COV [90-90] 90 1661 +COV [91-91] 91 1671 +COV [92-92] 92 1618 +COV [93-93] 93 1675 +COV [94-94] 94 1480 +COV [95-95] 95 1460 +COV [96-96] 96 1400 +COV [97-97] 97 1447 +COV [98-98] 98 1402 +COV [99-99] 99 1484 +COV [100-100] 100 1364 +COV [101-101] 101 1364 +COV [102-102] 102 1435 +COV [103-103] 103 1373 +COV [104-104] 104 1299 +COV [105-105] 105 1267 +COV [106-106] 106 1208 +COV [107-107] 107 1157 +COV [108-108] 108 1171 +COV [109-109] 109 1115 +COV [110-110] 110 1089 +COV [111-111] 111 1109 +COV [112-112] 112 1057 +COV [113-113] 113 1018 +COV [114-114] 114 1011 +COV [115-115] 115 976 +COV [116-116] 116 970 +COV [117-117] 117 887 +COV [118-118] 118 889 +COV [119-119] 119 876 +COV [120-120] 120 914 +COV [121-121] 121 835 +COV [122-122] 122 819 +COV [123-123] 123 751 +COV [124-124] 124 753 +COV [125-125] 125 766 +COV [126-126] 126 733 +COV [127-127] 127 650 +COV [128-128] 128 737 +COV [129-129] 129 745 +COV [130-130] 130 636 +COV [131-131] 131 643 +COV [132-132] 132 612 +COV [133-133] 133 668 +COV [134-134] 134 668 +COV [135-135] 135 645 +COV [136-136] 136 570 +COV [137-137] 137 587 +COV [138-138] 138 571 +COV [139-139] 139 616 +COV [140-140] 140 618 +COV [141-141] 141 571 +COV [142-142] 142 582 +COV [143-143] 143 535 +COV [144-144] 144 547 +COV [145-145] 145 519 +COV [146-146] 146 500 +COV [147-147] 147 500 +COV [148-148] 148 483 +COV [149-149] 149 463 +COV [150-150] 150 494 +COV [151-151] 151 474 +COV [152-152] 152 445 +COV [153-153] 153 477 +COV [154-154] 154 457 +COV [155-155] 155 427 +COV [156-156] 156 444 +COV [157-157] 157 436 +COV [158-158] 158 393 +COV [159-159] 159 382 +COV [160-160] 160 400 +COV [161-161] 161 436 +COV [162-162] 162 395 +COV [163-163] 163 387 +COV [164-164] 164 397 +COV [165-165] 165 419 +COV [166-166] 166 404 +COV [167-167] 167 393 +COV [168-168] 168 413 +COV [169-169] 169 415 +COV [170-170] 170 358 +COV [171-171] 171 335 +COV [172-172] 172 328 +COV [173-173] 173 334 +COV [174-174] 174 286 +COV [175-175] 175 315 +COV [176-176] 176 290 +COV [177-177] 177 305 +COV [178-178] 178 290 +COV [179-179] 179 285 +COV [180-180] 180 303 +COV [181-181] 181 251 +COV [182-182] 182 261 +COV [183-183] 183 265 +COV [184-184] 184 269 +COV [185-185] 185 242 +COV [186-186] 186 301 +COV [187-187] 187 284 +COV [188-188] 188 291 +COV [189-189] 189 293 +COV [190-190] 190 225 +COV [191-191] 191 255 +COV [192-192] 192 242 +COV [193-193] 193 247 +COV [194-194] 194 245 +COV [195-195] 195 205 +COV [196-196] 196 235 +COV [197-197] 197 236 +COV [198-198] 198 213 +COV [199-199] 199 217 +COV [200-200] 200 215 +COV [201-201] 201 175 +COV [202-202] 202 182 +COV [203-203] 203 206 +COV [204-204] 204 181 +COV [205-205] 205 212 +COV [206-206] 206 210 +COV [207-207] 207 212 +COV [208-208] 208 163 +COV [209-209] 209 216 +COV [210-210] 210 174 +COV [211-211] 211 195 +COV [212-212] 212 161 +COV [213-213] 213 182 +COV [214-214] 214 174 +COV [215-215] 215 147 +COV [216-216] 216 176 +COV [217-217] 217 185 +COV [218-218] 218 143 +COV [219-219] 219 154 +COV [220-220] 220 137 +COV [221-221] 221 159 +COV [222-222] 222 209 +COV [223-223] 223 168 +COV [224-224] 224 152 +COV [225-225] 225 161 +COV [226-226] 226 162 +COV [227-227] 227 177 +COV [228-228] 228 136 +COV [229-229] 229 127 +COV [230-230] 230 149 +COV [231-231] 231 151 +COV [232-232] 232 108 +COV [233-233] 233 139 +COV [234-234] 234 150 +COV [235-235] 235 153 +COV [236-236] 236 120 +COV [237-237] 237 128 +COV [238-238] 238 142 +COV [239-239] 239 113 +COV [240-240] 240 130 +COV [241-241] 241 112 +COV [242-242] 242 134 +COV [243-243] 243 145 +COV [244-244] 244 111 +COV [245-245] 245 174 +COV [246-246] 246 166 +COV [247-247] 247 144 +COV [248-248] 248 186 +COV [249-249] 249 130 +COV [250-250] 250 107 +COV [251-251] 251 153 +COV [252-252] 252 134 +COV [253-253] 253 135 +COV [254-254] 254 131 +COV [255-255] 255 110 +COV [256-256] 256 117 +COV [257-257] 257 113 +COV [258-258] 258 131 +COV [259-259] 259 107 +COV [260-260] 260 104 +COV [261-261] 261 131 +COV [262-262] 262 112 +COV [263-263] 263 128 +COV [264-264] 264 97 +COV [265-265] 265 129 +COV [266-266] 266 132 +COV [267-267] 267 95 +COV [268-268] 268 98 +COV [269-269] 269 115 +COV [270-270] 270 105 +COV [271-271] 271 121 +COV [272-272] 272 109 +COV [273-273] 273 115 +COV [274-274] 274 101 +COV [275-275] 275 97 +COV [276-276] 276 134 +COV [277-277] 277 112 +COV [278-278] 278 134 +COV [279-279] 279 133 +COV [280-280] 280 113 +COV [281-281] 281 104 +COV [282-282] 282 127 +COV [283-283] 283 126 +COV [284-284] 284 115 +COV [285-285] 285 115 +COV [286-286] 286 116 +COV [287-287] 287 99 +COV [288-288] 288 109 +COV [289-289] 289 107 +COV [290-290] 290 106 +COV [291-291] 291 96 +COV [292-292] 292 92 +COV [293-293] 293 93 +COV [294-294] 294 98 +COV [295-295] 295 95 +COV [296-296] 296 98 +COV [297-297] 297 116 +COV [298-298] 298 104 +COV [299-299] 299 108 +COV [300-300] 300 107 +COV [301-301] 301 106 +COV [302-302] 302 105 +COV [303-303] 303 114 +COV [304-304] 304 116 +COV [305-305] 305 91 +COV [306-306] 306 107 +COV [307-307] 307 114 +COV [308-308] 308 109 +COV [309-309] 309 111 +COV [310-310] 310 101 +COV [311-311] 311 132 +COV [312-312] 312 115 +COV [313-313] 313 120 +COV [314-314] 314 86 +COV [315-315] 315 109 +COV [316-316] 316 125 +COV [317-317] 317 126 +COV [318-318] 318 111 +COV [319-319] 319 106 +COV [320-320] 320 110 +COV [321-321] 321 107 +COV [322-322] 322 91 +COV [323-323] 323 100 +COV [324-324] 324 99 +COV [325-325] 325 100 +COV [326-326] 326 97 +COV [327-327] 327 122 +COV [328-328] 328 97 +COV [329-329] 329 142 +COV [330-330] 330 109 +COV [331-331] 331 114 +COV [332-332] 332 105 +COV [333-333] 333 109 +COV [334-334] 334 107 +COV [335-335] 335 97 +COV [336-336] 336 108 +COV [337-337] 337 86 +COV [338-338] 338 101 +COV [339-339] 339 95 +COV [340-340] 340 90 +COV [341-341] 341 93 +COV [342-342] 342 84 +COV [343-343] 343 92 +COV [344-344] 344 96 +COV [345-345] 345 105 +COV [346-346] 346 88 +COV [347-347] 347 90 +COV [348-348] 348 84 +COV [349-349] 349 85 +COV [350-350] 350 73 +COV [351-351] 351 99 +COV [352-352] 352 104 +COV [353-353] 353 95 +COV [354-354] 354 95 +COV [355-355] 355 95 +COV [356-356] 356 98 +COV [357-357] 357 125 +COV [358-358] 358 72 +COV [359-359] 359 71 +COV [360-360] 360 84 +COV [361-361] 361 84 +COV [362-362] 362 75 +COV [363-363] 363 95 +COV [364-364] 364 74 +COV [365-365] 365 78 +COV [366-366] 366 82 +COV [367-367] 367 81 +COV [368-368] 368 67 +COV [369-369] 369 79 +COV [370-370] 370 81 +COV [371-371] 371 74 +COV [372-372] 372 85 +COV [373-373] 373 72 +COV [374-374] 374 76 +COV [375-375] 375 62 +COV [376-376] 376 81 +COV [377-377] 377 82 +COV [378-378] 378 74 +COV [379-379] 379 55 +COV [380-380] 380 71 +COV [381-381] 381 80 +COV [382-382] 382 74 +COV [383-383] 383 69 +COV [384-384] 384 65 +COV [385-385] 385 78 +COV [386-386] 386 80 +COV [387-387] 387 72 +COV [388-388] 388 67 +COV [389-389] 389 81 +COV [390-390] 390 71 +COV [391-391] 391 53 +COV [392-392] 392 67 +COV [393-393] 393 49 +COV [394-394] 394 78 +COV [395-395] 395 85 +COV [396-396] 396 65 +COV [397-397] 397 69 +COV [398-398] 398 62 +COV [399-399] 399 68 +COV [400-400] 400 68 +COV [401-401] 401 56 +COV [402-402] 402 64 +COV [403-403] 403 45 +COV [404-404] 404 64 +COV [405-405] 405 64 +COV [406-406] 406 76 +COV [407-407] 407 82 +COV [408-408] 408 76 +COV [409-409] 409 69 +COV [410-410] 410 63 +COV [411-411] 411 66 +COV [412-412] 412 79 +COV [413-413] 413 56 +COV [414-414] 414 62 +COV [415-415] 415 63 +COV [416-416] 416 75 +COV [417-417] 417 61 +COV [418-418] 418 53 +COV [419-419] 419 57 +COV [420-420] 420 59 +COV [421-421] 421 50 +COV [422-422] 422 63 +COV [423-423] 423 63 +COV [424-424] 424 41 +COV [425-425] 425 71 +COV [426-426] 426 70 +COV [427-427] 427 59 +COV [428-428] 428 54 +COV [429-429] 429 52 +COV [430-430] 430 54 +COV [431-431] 431 56 +COV [432-432] 432 58 +COV [433-433] 433 59 +COV [434-434] 434 55 +COV [435-435] 435 43 +COV [436-436] 436 52 +COV [437-437] 437 50 +COV [438-438] 438 57 +COV [439-439] 439 66 +COV [440-440] 440 70 +COV [441-441] 441 55 +COV [442-442] 442 68 +COV [443-443] 443 61 +COV [444-444] 444 63 +COV [445-445] 445 64 +COV [446-446] 446 73 +COV [447-447] 447 61 +COV [448-448] 448 54 +COV [449-449] 449 56 +COV [450-450] 450 46 +COV [451-451] 451 69 +COV [452-452] 452 64 +COV [453-453] 453 53 +COV [454-454] 454 68 +COV [455-455] 455 65 +COV [456-456] 456 52 +COV [457-457] 457 68 +COV [458-458] 458 70 +COV [459-459] 459 59 +COV [460-460] 460 52 +COV [461-461] 461 60 +COV [462-462] 462 37 +COV [463-463] 463 59 +COV [464-464] 464 42 +COV [465-465] 465 70 +COV [466-466] 466 59 +COV [467-467] 467 44 +COV [468-468] 468 42 +COV [469-469] 469 52 +COV [470-470] 470 57 +COV [471-471] 471 75 +COV [472-472] 472 58 +COV [473-473] 473 48 +COV [474-474] 474 65 +COV [475-475] 475 61 +COV [476-476] 476 47 +COV [477-477] 477 47 +COV [478-478] 478 52 +COV [479-479] 479 43 +COV [480-480] 480 57 +COV [481-481] 481 45 +COV [482-482] 482 58 +COV [483-483] 483 63 +COV [484-484] 484 62 +COV [485-485] 485 57 +COV [486-486] 486 67 +COV [487-487] 487 65 +COV [488-488] 488 63 +COV [489-489] 489 67 +COV [490-490] 490 63 +COV [491-491] 491 62 +COV [492-492] 492 72 +COV [493-493] 493 62 +COV [494-494] 494 60 +COV [495-495] 495 60 +COV [496-496] 496 61 +COV [497-497] 497 70 +COV [498-498] 498 57 +COV [499-499] 499 62 +COV [500-500] 500 59 +COV [501-501] 501 51 +COV [502-502] 502 55 +COV [503-503] 503 59 +COV [504-504] 504 61 +COV [505-505] 505 56 +COV [506-506] 506 57 +COV [507-507] 507 57 +COV [508-508] 508 45 +COV [509-509] 509 62 +COV [510-510] 510 65 +COV [511-511] 511 40 +COV [512-512] 512 69 +COV [513-513] 513 64 +COV [514-514] 514 37 +COV [515-515] 515 57 +COV [516-516] 516 47 +COV [517-517] 517 38 +COV [518-518] 518 69 +COV [519-519] 519 38 +COV [520-520] 520 58 +COV [521-521] 521 51 +COV [522-522] 522 40 +COV [523-523] 523 47 +COV [524-524] 524 40 +COV [525-525] 525 49 +COV [526-526] 526 47 +COV [527-527] 527 38 +COV [528-528] 528 44 +COV [529-529] 529 55 +COV [530-530] 530 44 +COV [531-531] 531 32 +COV [532-532] 532 43 +COV [533-533] 533 41 +COV [534-534] 534 36 +COV [535-535] 535 46 +COV [536-536] 536 41 +COV [537-537] 537 54 +COV [538-538] 538 39 +COV [539-539] 539 49 +COV [540-540] 540 36 +COV [541-541] 541 34 +COV [542-542] 542 39 +COV [543-543] 543 47 +COV [544-544] 544 33 +COV [545-545] 545 29 +COV [546-546] 546 34 +COV [547-547] 547 36 +COV [548-548] 548 29 +COV [549-549] 549 34 +COV [550-550] 550 33 +COV [551-551] 551 70 +COV [552-552] 552 32 +COV [553-553] 553 45 +COV [554-554] 554 38 +COV [555-555] 555 31 +COV [556-556] 556 43 +COV [557-557] 557 38 +COV [558-558] 558 42 +COV [559-559] 559 29 +COV [560-560] 560 26 +COV [561-561] 561 23 +COV [562-562] 562 35 +COV [563-563] 563 39 +COV [564-564] 564 28 +COV [565-565] 565 30 +COV [566-566] 566 29 +COV [567-567] 567 30 +COV [568-568] 568 42 +COV [569-569] 569 42 +COV [570-570] 570 30 +COV [571-571] 571 23 +COV [572-572] 572 26 +COV [573-573] 573 37 +COV [574-574] 574 34 +COV [575-575] 575 35 +COV [576-576] 576 39 +COV [577-577] 577 34 +COV [578-578] 578 32 +COV [579-579] 579 28 +COV [580-580] 580 29 +COV [581-581] 581 25 +COV [582-582] 582 29 +COV [583-583] 583 43 +COV [584-584] 584 30 +COV [585-585] 585 34 +COV [586-586] 586 29 +COV [587-587] 587 29 +COV [588-588] 588 35 +COV [589-589] 589 27 +COV [590-590] 590 26 +COV [591-591] 591 25 +COV [592-592] 592 34 +COV [593-593] 593 29 +COV [594-594] 594 21 +COV [595-595] 595 22 +COV [596-596] 596 28 +COV [597-597] 597 33 +COV [598-598] 598 40 +COV [599-599] 599 28 +COV [600-600] 600 29 +COV [601-601] 601 39 +COV [602-602] 602 36 +COV [603-603] 603 28 +COV [604-604] 604 27 +COV [605-605] 605 27 +COV [606-606] 606 32 +COV [607-607] 607 24 +COV [608-608] 608 40 +COV [609-609] 609 36 +COV [610-610] 610 37 +COV [611-611] 611 29 +COV [612-612] 612 35 +COV [613-613] 613 30 +COV [614-614] 614 41 +COV [615-615] 615 36 +COV [616-616] 616 42 +COV [617-617] 617 35 +COV [618-618] 618 27 +COV [619-619] 619 32 +COV [620-620] 620 33 +COV [621-621] 621 27 +COV [622-622] 622 43 +COV [623-623] 623 34 +COV [624-624] 624 39 +COV [625-625] 625 36 +COV [626-626] 626 31 +COV [627-627] 627 42 +COV [628-628] 628 29 +COV [629-629] 629 38 +COV [630-630] 630 32 +COV [631-631] 631 30 +COV [632-632] 632 38 +COV [633-633] 633 39 +COV [634-634] 634 26 +COV [635-635] 635 30 +COV [636-636] 636 23 +COV [637-637] 637 34 +COV [638-638] 638 23 +COV [639-639] 639 28 +COV [640-640] 640 36 +COV [641-641] 641 30 +COV [642-642] 642 43 +COV [643-643] 643 37 +COV [644-644] 644 36 +COV [645-645] 645 32 +COV [646-646] 646 39 +COV [647-647] 647 29 +COV [648-648] 648 37 +COV [649-649] 649 40 +COV [650-650] 650 31 +COV [651-651] 651 32 +COV [652-652] 652 24 +COV [653-653] 653 19 +COV [654-654] 654 28 +COV [655-655] 655 29 +COV [656-656] 656 27 +COV [657-657] 657 33 +COV [658-658] 658 28 +COV [659-659] 659 18 +COV [660-660] 660 25 +COV [661-661] 661 33 +COV [662-662] 662 29 +COV [663-663] 663 31 +COV [664-664] 664 26 +COV [665-665] 665 35 +COV [666-666] 666 21 +COV [667-667] 667 27 +COV [668-668] 668 26 +COV [669-669] 669 22 +COV [670-670] 670 30 +COV [671-671] 671 31 +COV [672-672] 672 21 +COV [673-673] 673 34 +COV [674-674] 674 40 +COV [675-675] 675 35 +COV [676-676] 676 36 +COV [677-677] 677 32 +COV [678-678] 678 40 +COV [679-679] 679 33 +COV [680-680] 680 32 +COV [681-681] 681 23 +COV [682-682] 682 32 +COV [683-683] 683 27 +COV [684-684] 684 32 +COV [685-685] 685 30 +COV [686-686] 686 31 +COV [687-687] 687 26 +COV [688-688] 688 28 +COV [689-689] 689 31 +COV [690-690] 690 22 +COV [691-691] 691 27 +COV [692-692] 692 22 +COV [693-693] 693 27 +COV [694-694] 694 27 +COV [695-695] 695 25 +COV [696-696] 696 25 +COV [697-697] 697 32 +COV [698-698] 698 25 +COV [699-699] 699 27 +COV [700-700] 700 27 +COV [701-701] 701 27 +COV [702-702] 702 24 +COV [703-703] 703 29 +COV [704-704] 704 22 +COV [705-705] 705 26 +COV [706-706] 706 16 +COV [707-707] 707 23 +COV [708-708] 708 23 +COV [709-709] 709 23 +COV [710-710] 710 28 +COV [711-711] 711 26 +COV [712-712] 712 28 +COV [713-713] 713 39 +COV [714-714] 714 22 +COV [715-715] 715 29 +COV [716-716] 716 16 +COV [717-717] 717 18 +COV [718-718] 718 26 +COV [719-719] 719 22 +COV [720-720] 720 21 +COV [721-721] 721 20 +COV [722-722] 722 30 +COV [723-723] 723 26 +COV [724-724] 724 25 +COV [725-725] 725 22 +COV [726-726] 726 24 +COV [727-727] 727 30 +COV [728-728] 728 21 +COV [729-729] 729 26 +COV [730-730] 730 20 +COV [731-731] 731 30 +COV [732-732] 732 27 +COV [733-733] 733 28 +COV [734-734] 734 25 +COV [735-735] 735 22 +COV [736-736] 736 32 +COV [737-737] 737 36 +COV [738-738] 738 32 +COV [739-739] 739 26 +COV [740-740] 740 22 +COV [741-741] 741 21 +COV [742-742] 742 18 +COV [743-743] 743 28 +COV [744-744] 744 28 +COV [745-745] 745 21 +COV [746-746] 746 16 +COV [747-747] 747 30 +COV [748-748] 748 28 +COV [749-749] 749 22 +COV [750-750] 750 21 +COV [751-751] 751 30 +COV [752-752] 752 12 +COV [753-753] 753 24 +COV [754-754] 754 28 +COV [755-755] 755 19 +COV [756-756] 756 36 +COV [757-757] 757 27 +COV [758-758] 758 26 +COV [759-759] 759 29 +COV [760-760] 760 26 +COV [761-761] 761 24 +COV [762-762] 762 21 +COV [763-763] 763 18 +COV [764-764] 764 19 +COV [765-765] 765 26 +COV [766-766] 766 21 +COV [767-767] 767 17 +COV [768-768] 768 26 +COV [769-769] 769 18 +COV [770-770] 770 14 +COV [771-771] 771 18 +COV [772-772] 772 20 +COV [773-773] 773 21 +COV [774-774] 774 20 +COV [775-775] 775 16 +COV [776-776] 776 17 +COV [777-777] 777 24 +COV [778-778] 778 12 +COV [779-779] 779 19 +COV [780-780] 780 14 +COV [781-781] 781 25 +COV [782-782] 782 21 +COV [783-783] 783 27 +COV [784-784] 784 21 +COV [785-785] 785 19 +COV [786-786] 786 23 +COV [787-787] 787 19 +COV [788-788] 788 24 +COV [789-789] 789 15 +COV [790-790] 790 17 +COV [791-791] 791 16 +COV [792-792] 792 23 +COV [793-793] 793 19 +COV [794-794] 794 17 +COV [795-795] 795 13 +COV [796-796] 796 18 +COV [797-797] 797 23 +COV [798-798] 798 22 +COV [799-799] 799 22 +COV [800-800] 800 13 +COV [801-801] 801 13 +COV [802-802] 802 13 +COV [803-803] 803 13 +COV [804-804] 804 23 +COV [805-805] 805 20 +COV [806-806] 806 17 +COV [807-807] 807 16 +COV [808-808] 808 11 +COV [809-809] 809 23 +COV [810-810] 810 17 +COV [811-811] 811 10 +COV [812-812] 812 17 +COV [813-813] 813 12 +COV [814-814] 814 14 +COV [815-815] 815 14 +COV [816-816] 816 14 +COV [817-817] 817 24 +COV [818-818] 818 17 +COV [819-819] 819 21 +COV [820-820] 820 21 +COV [821-821] 821 10 +COV [822-822] 822 20 +COV [823-823] 823 19 +COV [824-824] 824 17 +COV [825-825] 825 18 +COV [826-826] 826 21 +COV [827-827] 827 24 +COV [828-828] 828 14 +COV [829-829] 829 21 +COV [830-830] 830 25 +COV [831-831] 831 18 +COV [832-832] 832 23 +COV [833-833] 833 19 +COV [834-834] 834 17 +COV [835-835] 835 19 +COV [836-836] 836 19 +COV [837-837] 837 20 +COV [838-838] 838 24 +COV [839-839] 839 20 +COV [840-840] 840 16 +COV [841-841] 841 21 +COV [842-842] 842 20 +COV [843-843] 843 17 +COV [844-844] 844 18 +COV [845-845] 845 14 +COV [846-846] 846 16 +COV [847-847] 847 11 +COV [848-848] 848 17 +COV [849-849] 849 12 +COV [850-850] 850 18 +COV [851-851] 851 22 +COV [852-852] 852 15 +COV [853-853] 853 17 +COV [854-854] 854 16 +COV [855-855] 855 18 +COV [856-856] 856 11 +COV [857-857] 857 7 +COV [858-858] 858 6 +COV [859-859] 859 23 +COV [860-860] 860 14 +COV [861-861] 861 10 +COV [862-862] 862 19 +COV [863-863] 863 8 +COV [864-864] 864 14 +COV [865-865] 865 10 +COV [866-866] 866 9 +COV [867-867] 867 11 +COV [868-868] 868 16 +COV [869-869] 869 8 +COV [870-870] 870 9 +COV [871-871] 871 9 +COV [872-872] 872 13 +COV [873-873] 873 6 +COV [874-874] 874 15 +COV [875-875] 875 5 +COV [876-876] 876 6 +COV [877-877] 877 8 +COV [878-878] 878 8 +COV [879-879] 879 14 +COV [880-880] 880 8 +COV [881-881] 881 20 +COV [882-882] 882 15 +COV [883-883] 883 12 +COV [884-884] 884 14 +COV [885-885] 885 14 +COV [886-886] 886 12 +COV [887-887] 887 11 +COV [888-888] 888 13 +COV [889-889] 889 11 +COV [890-890] 890 6 +COV [891-891] 891 11 +COV [892-892] 892 9 +COV [893-893] 893 9 +COV [894-894] 894 12 +COV [895-895] 895 16 +COV [896-896] 896 10 +COV [897-897] 897 8 +COV [898-898] 898 8 +COV [899-899] 899 11 +COV [900-900] 900 7 +COV [901-901] 901 15 +COV [902-902] 902 13 +COV [903-903] 903 17 +COV [904-904] 904 9 +COV [905-905] 905 8 +COV [906-906] 906 13 +COV [907-907] 907 10 +COV [908-908] 908 8 +COV [909-909] 909 13 +COV [910-910] 910 7 +COV [911-911] 911 9 +COV [912-912] 912 8 +COV [913-913] 913 9 +COV [914-914] 914 8 +COV [915-915] 915 9 +COV [916-916] 916 6 +COV [917-917] 917 9 +COV [918-918] 918 7 +COV [919-919] 919 9 +COV [920-920] 920 8 +COV [921-921] 921 13 +COV [922-922] 922 5 +COV [923-923] 923 5 +COV [924-924] 924 5 +COV [925-925] 925 7 +COV [926-926] 926 10 +COV [927-927] 927 6 +COV [928-928] 928 21 +COV [929-929] 929 10 +COV [930-930] 930 10 +COV [931-931] 931 7 +COV [932-932] 932 12 +COV [933-933] 933 14 +COV [934-934] 934 14 +COV [935-935] 935 7 +COV [936-936] 936 12 +COV [937-937] 937 13 +COV [938-938] 938 10 +COV [939-939] 939 12 +COV [940-940] 940 18 +COV [941-941] 941 11 +COV [942-942] 942 10 +COV [943-943] 943 6 +COV [944-944] 944 12 +COV [945-945] 945 12 +COV [946-946] 946 8 +COV [947-947] 947 12 +COV [948-948] 948 10 +COV [949-949] 949 5 +COV [950-950] 950 9 +COV [951-951] 951 16 +COV [952-952] 952 13 +COV [953-953] 953 15 +COV [954-954] 954 15 +COV [955-955] 955 8 +COV [956-956] 956 15 +COV [957-957] 957 18 +COV [958-958] 958 9 +COV [959-959] 959 21 +COV [960-960] 960 14 +COV [961-961] 961 17 +COV [962-962] 962 9 +COV [963-963] 963 14 +COV [964-964] 964 6 +COV [965-965] 965 5 +COV [966-966] 966 13 +COV [967-967] 967 12 +COV [968-968] 968 13 +COV [969-969] 969 10 +COV [970-970] 970 13 +COV [971-971] 971 8 +COV [972-972] 972 13 +COV [973-973] 973 12 +COV [974-974] 974 14 +COV [975-975] 975 9 +COV [976-976] 976 12 +COV [977-977] 977 4 +COV [978-978] 978 14 +COV [979-979] 979 6 +COV [980-980] 980 12 +COV [981-981] 981 5 +COV [982-982] 982 8 +COV [983-983] 983 4 +COV [984-984] 984 9 +COV [985-985] 985 9 +COV [986-986] 986 10 +COV [987-987] 987 8 +COV [988-988] 988 4 +COV [989-989] 989 6 +COV [990-990] 990 3 +COV [991-991] 991 5 +COV [992-992] 992 2 +COV [993-993] 993 6 +COV [994-994] 994 6 +COV [995-995] 995 7 +COV [996-996] 996 14 +COV [997-997] 997 12 +COV [998-998] 998 7 +COV [999-999] 999 8 +COV [1000-1000] 1000 8 +COV [1000<] 1000 5025 +# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile +GCD 0.0 0.554 0.000 0.000 0.000 0.000 0.000 +GCD 0.5 0.831 0.525 0.525 0.525 0.525 0.525 +GCD 36.0 1.385 0.954 0.954 0.954 1.490 1.490 +GCD 37.0 2.216 2.495 2.495 4.146 6.560 6.560 +GCD 38.0 5.263 0.247 0.454 3.520 5.868 9.883 +GCD 39.0 9.141 0.177 0.303 2.161 8.777 12.812 +GCD 40.0 12.188 0.020 1.192 9.060 22.018 27.371 +GCD 41.0 16.343 0.035 0.550 2.702 11.469 12.908 +GCD 42.0 21.884 0.010 0.172 2.121 5.621 17.094 +GCD 43.0 28.255 0.010 0.328 1.449 4.277 10.166 +GCD 44.0 36.288 0.162 0.394 5.484 15.145 50.490 +GCD 45.0 42.105 0.020 0.131 1.252 7.009 17.811 +GCD 46.0 49.861 0.015 0.121 0.636 1.939 37.506 +GCD 47.0 56.510 0.030 0.141 1.015 4.500 6.338 +GCD 48.0 64.543 0.010 0.091 2.565 7.287 21.872 +GCD 49.0 68.975 0.010 0.333 0.672 10.751 27.129 +GCD 50.0 73.407 0.010 0.121 1.358 3.883 6.615 +GCD 51.0 77.008 0.121 0.576 1.576 4.363 13.923 +GCD 52.0 81.994 0.010 0.086 1.560 4.414 109.383 +GCD 53.0 84.488 0.040 0.071 0.500 3.025 31.234 +GCD 54.0 86.704 0.020 0.313 9.332 39.683 203.959 +GCD 55.0 89.197 0.005 0.051 1.268 5.045 23.578 +GCD 56.0 91.136 0.071 0.192 1.566 9.994 33.315 +GCD 57.0 94.460 0.040 0.348 1.167 5.050 11.660 +GCD 58.0 95.845 0.131 0.131 1.899 2.742 4.929 +GCD 59.0 96.399 3.313 3.313 3.313 3.666 3.666 +GCD 60.0 97.507 0.995 0.995 5.176 6.954 33.234 +GCD 61.0 98.338 1.591 1.591 1.788 4.848 4.848 +GCD 62.0 98.892 3.171 3.171 3.171 7.343 7.343 +GCD 63.0 99.446 0.530 0.530 0.530 6.403 6.403 +GCD 64.0 100.000 1.025 1.025 1.025 4.585 4.585