Mercurial > repos > engineson > multiqc
view test-data/collectGcBias_data.txt @ 11:e18704835dfd draft
Updated from github with appropriate url
| author | engineson |
|---|---|
| date | Fri, 07 Jul 2017 07:56:04 -0400 |
| parents | 8f25feb85166 |
| children |
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## htsjdk.samtools.metrics.StringHeader # picard.analysis.CollectGcBiasMetrics CHART_OUTPUT=/omaha-beach/cloud_26/files/000/dataset_195.dat SUMMARY_OUTPUT=/omaha-beach/cloud_26/files/000/dataset_193.dat WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 IS_BISULFITE_SEQUENCED=true INPUT=/omaha-beach/cloud_26/files/000/dataset_114.dat OUTPUT=/omaha-beach/cloud_26/files/000/dataset_194.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa METRIC_ACCUMULATION_LEVEL=[ALL_READS] STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json ## htsjdk.samtools.metrics.StringHeader # Started on: Mon May 23 09:32:30 UTC 2016 ## METRICS CLASS picard.analysis.GcBiasDetailMetrics ACCUMULATION_LEVEL GC WINDOWS READ_STARTS MEAN_BASE_QUALITY NORMALIZED_COVERAGE ERROR_BAR_WIDTH SAMPLE LIBRARY READ_GROUP All Reads 0 0 0 0 0 0 All Reads 1 0 0 0 0 0 All Reads 2 0 0 0 0 0 All Reads 3 10 0 0 0 0 All Reads 4 7 0 0 0 0 All Reads 5 6 0 0 0 0 All Reads 6 4 0 0 0 0 All Reads 7 9 0 0 0 0 All Reads 8 22 0 0 0 0 All Reads 9 15 0 0 0 0 All Reads 10 20 0 0 0 0 All Reads 11 18 0 0 0 0 All Reads 12 101 0 0 0 0 All Reads 13 118 0 0 0 0 All Reads 14 137 1 20 0.110575 0.110575 All Reads 15 243 4 19 0.249362 0.124681 All Reads 16 366 10 21 0.4139 0.130887 All Reads 17 468 9 24 0.291322 0.097107 All Reads 18 689 25 24 0.549664 0.109933 All Reads 19 1087 40 26 0.557451 0.088141 All Reads 20 2152 95 25 0.668741 0.068611 All Reads 21 3279 127 23 0.586731 0.052064 All Reads 22 5106 178 23 0.528099 0.039583 All Reads 23 7817 319 23 0.618197 0.034612 All Reads 24 11933 630 24 0.799774 0.031864 All Reads 25 17449 759 25 0.658943 0.023918 All Reads 26 25272 1414 26 0.847591 0.02254 All Reads 27 34926 1806 25 0.783331 0.018433 All Reads 28 48489 2889 26 0.90257 0.016792 All Reads 29 64950 4285 26 0.99942 0.015268 All Reads 30 84452 5453 26 0.978142 0.013246 All Reads 31 107535 6476 26 0.912291 0.011337 All Reads 32 134982 7953 26 0.892548 0.010008 All Reads 33 165941 9475 26 0.864972 0.008886 All Reads 34 199087 11437 26 0.870253 0.008137 All Reads 35 233144 12856 26 0.83533 0.007367 All Reads 36 266049 14918 26 0.849426 0.006955 All Reads 37 298999 17019 26 0.862265 0.00661 All Reads 38 327958 20230 26 0.934446 0.00657 All Reads 39 350801 22684 26 0.97957 0.006504 All Reads 40 369841 23670 26 0.969527 0.006302 All Reads 41 383262 25527 26 1.008975 0.006315 All Reads 42 392470 26131 25 1.008617 0.006239 All Reads 43 395234 25603 25 0.981326 0.006133 All Reads 44 392428 26425 25 1.020074 0.006275 All Reads 45 386569 25213 25 0.988039 0.006222 All Reads 46 376763 25980 25 1.044594 0.006481 All Reads 47 363422 24801 25 1.033795 0.006564 All Reads 48 348339 24838 25 1.080167 0.006854 All Reads 49 331960 24992 24 1.140491 0.007214 All Reads 50 315781 23793 24 1.141405 0.0074 All Reads 51 297249 22601 24 1.151818 0.007662 All Reads 52 278159 19653 24 1.070317 0.007635 All Reads 53 263713 19395 24 1.114127 0.008 All Reads 54 247317 19047 24 1.166673 0.008453 All Reads 55 230663 17922 23 1.177023 0.008792 All Reads 56 215458 16244 23 1.142107 0.008961 All Reads 57 198515 14904 23 1.137329 0.009316 All Reads 58 180718 13720 23 1.150083 0.009819 All Reads 59 165914 11940 23 1.090179 0.009977 All Reads 60 152561 10775 23 1.069917 0.010307 All Reads 61 138857 9746 23 1.063249 0.01077 All Reads 62 125804 9067 22 1.091807 0.011466 All Reads 63 112222 7148 22 0.964902 0.011413 All Reads 64 99218 6056 23 0.924638 0.011882 All Reads 65 85414 5612 24 0.995326 0.013286 All Reads 66 72999 4286 23 0.88943 0.013586 All Reads 67 61396 3631 23 0.895907 0.014868 All Reads 68 52109 3341 22 0.971271 0.016804 All Reads 69 45121 2735 21 0.918238 0.017558 All Reads 70 38925 1675 21 0.651873 0.015928 All Reads 71 32225 1053 22 0.495008 0.015254 All Reads 72 27537 721 22 0.396639 0.014772 All Reads 73 23481 483 22 0.311607 0.014179 All Reads 74 20300 423 22 0.315661 0.015348 All Reads 75 17785 245 22 0.208684 0.013332 All Reads 76 15846 236 22 0.225615 0.014686 All Reads 77 13683 230 22 0.254638 0.01679 All Reads 78 11733 217 23 0.280174 0.019019 All Reads 79 10547 188 22 0.270026 0.019694 All Reads 80 9314 151 22 0.245594 0.019986 All Reads 81 7659 149 23 0.294707 0.024143 All Reads 82 5813 56 25 0.145937 0.019502 All Reads 83 4687 46 23 0.148676 0.021921 All Reads 84 3505 18 23 0.077797 0.018337 All Reads 85 2385 8 23 0.050813 0.017965 All Reads 86 1424 5 21 0.053191 0.023788 All Reads 87 859 3 20 0.052906 0.030545 All Reads 88 529 0 0 0 0 All Reads 89 411 0 0 0 0 All Reads 90 348 0 0 0 0 All Reads 91 138 0 0 0 0 All Reads 92 40 0 0 0 0 All Reads 93 7 0 0 0 0 All Reads 94 7 0 0 0 0 All Reads 95 12 0 0 0 0 All Reads 96 17 0 0 0 0 All Reads 97 8 0 0 0 0 All Reads 98 9 0 0 0 0 All Reads 99 5 0 0 0 0 All Reads 100 30 0 0 0 0