Mercurial > repos > engineson > multiqc
view test-data/picard_CollectBaseDistributionByCycle.txt @ 11:e18704835dfd draft
Updated from github with appropriate url
| author | engineson |
|---|---|
| date | Fri, 07 Jul 2017 07:56:04 -0400 |
| parents | c503e1c1fbad |
| children |
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## htsjdk.samtools.metrics.StringHeader # picard.analysis.CollectBaseDistributionByCycle CHART_OUTPUT=/data/galaxy2/files/000/163/dataset_163657.dat ALIGNED_READS_ONLY=true PF_READS_ONLY=true INPUT=D11_H4K16ac_Rep1_R1_fastq_gz OUTPUT=/data/galaxy2/files/000/163/dataset_163656.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=/data/repository/organisms/GRCm38_ensembl/genome_fasta/genome.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json ## htsjdk.samtools.metrics.StringHeader # Started on: Fri Apr 21 13:59:56 CEST 2017 ## METRICS CLASS picard.analysis.BaseDistributionByCycleMetrics READ_END CYCLE PCT_A PCT_C PCT_G PCT_T PCT_N 1 1 45.534532 6.100294 6.278409 41.942176 0.144589 1 2 18.642016 31.079914 32.291905 17.974837 0.011328 1 3 25.118841 24.321879 26.15791 24.401106 0.000264 1 4 22.612561 27.464826 27.30928 22.606024 0.007309 1 5 27.970543 22.96859 21.970694 27.090173 0 1 6 28.405874 22.976144 21.741647 26.875952 0.000383 1 7 31.150444 19.648545 20.094438 29.10656 0.000013 1 8 31.215988 19.341113 20.496087 28.946812 0 1 9 31.733121 18.755302 20.342562 29.169015 0 1 10 31.51068 19.338274 20.26157 28.889475 0 1 11 31.155932 19.344704 20.729096 28.770267 0 1 12 28.641307 21.681095 22.115748 27.561843 0.000006 1 13 28.644403 21.190688 21.233551 28.931359 0 1 14 27.912176 22.509522 21.398893 28.179408 0 1 15 29.987269 20.65125 20.583967 28.777514 0 1 16 30.695446 20.751024 19.720664 28.832866 0 1 17 32.301494 19.466964 19.056719 29.174754 0.000069 1 18 31.991424 19.465319 19.428886 29.114371 0 1 19 31.223398 19.283091 20.843846 28.649665 0 1 20 30.001159 20.431045 21.682439 27.885357 0 1 21 30.268972 20.128608 21.518529 28.08389 0 1 22 29.507609 20.991486 21.551678 27.949227 0 1 23 29.228924 20.961638 22.202396 27.607042 0 1 24 28.895271 21.140428 22.773371 27.190931 0 1 25 30.220087 20.183506 21.007244 28.589163 0 1 26 30.747733 19.55149 20.989765 28.711005 0.000006 1 27 30.618992 19.162575 20.686703 29.531698 0.000031 1 28 31.561628 19.651299 20.291748 28.495305 0.000019 1 29 31.889741 19.244628 20.387671 28.477401 0.000559 1 30 30.01585 20.370968 21.669604 27.943339 0.000239 1 31 29.948939 20.187892 21.74697 28.116198 0 1 32 29.83526 20.721207 21.226889 28.216644 0 1 33 28.951574 21.118594 21.807089 28.122743 0 1 34 29.250508 21.589012 20.80903 28.351444 0.000006 1 35 29.741069 20.846087 21.339816 28.073028 0 1 36 29.685575 20.657699 21.409349 28.247377 0 1 37 30.435943 19.845352 21.605325 28.11328 0.0001 1 38 31.52442 19.566381 20.859275 28.049918 0.000006 1 39 31.915805 19.322889 20.315213 28.445698 0.000396 1 40 31.415236 19.831291 20.60081 28.152663 0 1 41 31.151606 20.007274 19.953602 28.887329 0.000188 1 42 29.605015 21.700164 21.132809 27.561943 0.000069 1 43 28.856192 21.690732 21.620633 27.832141 0.000302 1 44 28.354815 21.89939 21.789262 27.956319 0.000214 1 45 28.785938 21.376155 22.083299 27.443347 0.311262 1 46 30.020967 20.974608 20.997153 28.006939 0.000333 1 47 30.905677 19.834877 21.050285 28.209156 0.000006 1 48 31.123254 20.025503 20.781792 28.068879 0.000572 1 49 32.061167 19.135286 20.210972 28.592399 0.000176 1 50 31.368968 19.831498 20.33522 28.464018 0.000295 1 51 30.241493 20.530902 21.628272 27.599157 0.000176 1 52 29.272115 21.228524 22.138875 27.360278 0.000208 1 53 28.876831 20.985166 22.109191 28.028328 0.000484 1 54 28.25128 21.263287 22.617006 27.868106 0.000321 1 55 29.677859 20.048159 21.516525 28.756368 0.001089 1 56 31.025964 19.638994 21.162354 28.1717 0.000988 1 57 32.3089 19.022943 19.727314 28.939987 0.000856 1 58 33.069967 18.780516 19.315424 28.832859 0.001234 1 59 32.5634 19.018873 19.681712 28.735624 0.000391 1 60 31.033388 19.63991 20.28236 29.043106 0.001235 1 61 28.877884 21.063797 22.54864 27.508242 0.001437 1 62 28.206236 21.933072 21.756687 28.103248 0.000757 1 63 28.076144 21.765468 22.13245 28.025345 0.000593 1 64 28.444021 21.930975 21.519278 28.105031 0.000694 1 65 30.427586 20.515343 21.251214 27.804511 0.001345 1 66 30.96119 20.454946 20.819432 27.764078 0.000354 1 67 31.55559 19.752271 19.98091 28.7104 0.000829 1 68 30.884355 19.787006 21.169721 28.158438 0.000481 1 69 29.915794 19.951388 21.827419 28.302832 0.002566 1 70 29.720163 20.878848 21.185973 28.214947 0.00007 1 71 28.563014 21.296438 21.558676 28.580233 0.001639 1 72 27.775812 22.725309 21.897851 27.599987 0.001041 1 73 28.801882 22.042398 21.835818 27.319535 0.000367 1 74 29.842933 21.375107 20.192959 28.587638 0.001363 1 75 28.875221 21.990286 22.042923 27.09157 0