annotate ezlncpred.xml @ 23:954376f8db01 draft

Uploaded
author enios
date Wed, 26 May 2021 16:15:44 +0000
parents f4dea7954ab6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
1 <tool id="ezlncpred" name="ezLncPred" >
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
2 <description>"ezLncPred"</description>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
3 <requirements>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
4 <container type="docker">eniosorg/bim:ezlncpred</container>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
5 </requirements>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
6 <command><![CDATA[ezLncPred -i $fasta_file -o out $model
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
7 #if $model =="CPAT"
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
8 -p Human
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
9 #end if
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
10 #if $model =="CPPred"
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
11 -p Human
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
12 #end if
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
13 #if $model =="longdist"
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
14 -z 200 -p Human
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
15 #end if
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
16 && mv out $out
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
17 ]]></command>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
18 <inputs>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
19 <param type="data" name="fasta_file" format="fasta" />
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
20 <param type="select" name="model">
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
21 <!--option value="CNCI">CNCI</option>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
22 <option value="CPC2">CPC2</option-->
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
23 <option value="CPAT">CPAT</option>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
24 <option value="lgc">lgc</option>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
25 <option value="CPPred">CPPred</option>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
26 <!--option value="GFStack">GFStack</option-->
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
27 <option value="longdist">longdist</option>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
28 <!--option value="PLEK">PLEK</option>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
29 <option value="LncADeep">LncDeep</option-->
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
30 </param>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
31 </inputs>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
32 <outputs>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
33 <data name="out" format="txt" from_work_directory="out"/>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
34 </outputs>
f4dea7954ab6 Uploaded
enios
parents:
diff changeset
35 </tool>