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2
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1 <tool id="lncadeep" name="LncADeep" >
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2 <description>"LncADeep"</description>
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3 <requirements>
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4 <container type="docker">bianca7/lncadeep</container>
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5 </requirements>
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6 <command><![CDATA[python /usr/local/lib/python2.7/site-packages/LncADeep/LncADeep.py -MODE anno
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7 -o test
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8 -l $RNA_FILE
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9 -p $PROTEIN_FILE
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10 -a 1
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11 && tar -cvf results.tar test_LncADeep_anno_results && mv results.tar $results
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12 ]]></command>
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13 <inputs>
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14 <param type="data" name="RNA_FILE" format="fasta" label="RNA sequences in FASTA format" />
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15 <param type="data" name="PROTEIN_FILE" format="fasta" label="protein sequences in FASTA format" />
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16 </inputs>
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17 <outputs>
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18 <data name="results" format="tar" />
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19 </outputs>
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20 </tool>
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