Mercurial > repos > enios > nc_rna
annotate tcga_heatmap.xml @ 5:b2b5f193f5bd draft
Uploaded
| author | enios |
|---|---|
| date | Wed, 21 Apr 2021 10:54:52 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
| 5 | 1 <tool id="tcga_heatmap" name="TCGA_HEATMAP" > |
| 2 <requirements> | |
| 3 <container type="docker">bianca7/lncrna:tcga</container> | |
| 4 </requirements> | |
| 5 <description>Test your signature on TCGA data</description> | |
| 6 <stdio> | |
| 7 <exit_code range="1:" level="fatal" /> | |
| 8 </stdio> | |
| 9 <command><![CDATA[ Rscript /Heatmap1.R -g "$signature" -c "$cancer_type" -R "/$output1" -o "/$output2" | |
| 10 ]]></command> | |
| 11 <inputs> | |
| 12 <param format="tabular,txt" name="signature" type="data" label="gene signature" /> | |
| 13 <param name="cancer_type" type="text" label="TCGA-cancer project" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="pdf" name="output1" label="Heatmap"/> | |
| 17 <data format="html" name="output2" label="Heatmap"/> | |
| 18 </outputs> | |
| 19 </tool> |