Mercurial > repos > enios > nc_rna

diff lncadeep.xml @ 2:0980d96fe692 draft

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author enios
date Wed, 21 Apr 2021 10:53:31 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lncadeep.xml	Wed Apr 21 10:53:31 2021 +0000
@@ -0,0 +1,20 @@
+<tool id="lncadeep" name="LncADeep" >
+    <description>"LncADeep"</description>
+    <requirements>
+        <container type="docker">bianca7/lncadeep</container>
+    </requirements>
+    <command><![CDATA[python /usr/local/lib/python2.7/site-packages/LncADeep/LncADeep.py -MODE anno
+      -o test
+      -l $RNA_FILE
+      -p $PROTEIN_FILE
+      -a 1
+      && tar -cvf results.tar test_LncADeep_anno_results && mv results.tar $results
+    ]]></command>
+    <inputs>
+        <param type="data" name="RNA_FILE" format="fasta" label="RNA  sequences in FASTA format" />
+        <param type="data" name="PROTEIN_FILE" format="fasta" label="protein sequences in FASTA format" />
+    </inputs>
+    <outputs>
+        <data name="results" format="tar" />
+    </outputs>
+</tool>