Mercurial > repos > enios > nc_rna

diff ezlncpred.xml @ 6:f4dea7954ab6 draft

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author enios
date Wed, 21 Apr 2021 10:55:26 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ezlncpred.xml	Wed Apr 21 10:55:26 2021 +0000
@@ -0,0 +1,35 @@
+<tool id="ezlncpred" name="ezLncPred" >
+    <description>"ezLncPred"</description>
+    <requirements>
+        <container type="docker">eniosorg/bim:ezlncpred</container>
+    </requirements>
+    <command><![CDATA[ezLncPred -i $fasta_file -o out $model
+      #if $model =="CPAT"
+        -p Human
+      #end if
+      #if $model =="CPPred"
+        -p Human
+      #end if
+      #if $model =="longdist"
+        -z 200 -p Human
+      #end if
+      && mv out $out
+   ]]></command>
+   <inputs>
+     <param type="data" name="fasta_file" format="fasta" />
+     <param type="select" name="model">
+       <!--option value="CNCI">CNCI</option>
+       <option value="CPC2">CPC2</option-->
+       <option value="CPAT">CPAT</option>
+       <option value="lgc">lgc</option>
+       <option value="CPPred">CPPred</option>
+       <!--option value="GFStack">GFStack</option-->
+       <option value="longdist">longdist</option>
+       <!--option value="PLEK">PLEK</option>
+       <option value="LncADeep">LncDeep</option-->
+     </param>
+  </inputs>
+  <outputs>
+    <data name="out" format="txt" from_work_directory="out"/>
+  </outputs>
+</tool>