Mercurial > repos > enios > nc_rna
view tcga_heatmap.xml @ 15:97abe4dc3ee3 draft
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author | enios |
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date | Sat, 22 May 2021 07:30:24 +0000 |
parents | b2b5f193f5bd |
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<tool id="tcga_heatmap" name="TCGA_HEATMAP" > <requirements> <container type="docker">bianca7/lncrna:tcga</container> </requirements> <description>Test your signature on TCGA data</description> <stdio> <exit_code range="1:" level="fatal" /> </stdio> <command><![CDATA[ Rscript /Heatmap1.R -g "$signature" -c "$cancer_type" -R "/$output1" -o "/$output2" ]]></command> <inputs> <param format="tabular,txt" name="signature" type="data" label="gene signature" /> <param name="cancer_type" type="text" label="TCGA-cancer project" /> </inputs> <outputs> <data format="pdf" name="output1" label="Heatmap"/> <data format="html" name="output2" label="Heatmap"/> </outputs> </tool>