Mercurial > repos > enios > nc_rna
view interactions.xml @ 5:b2b5f193f5bd draft
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author | enios |
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date | Wed, 21 Apr 2021 10:54:52 +0000 |
parents | 17a9bf6ca902 |
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<tool id="interactions" name="rnaInteractions" > <requirements> <container type="docker">bianca7/lncrna:interactions</container> </requirements> <description>RNA-RNA interactions from RISE and NPINTER databases</description> <stdio> <exit_code range="1:" level="fatal" /> </stdio> <command><![CDATA[ Rscript /code/interactions.R $RNAs_file && cp bim_triplnetwork.tsv "$output1" && cp cs_triplnetwork.tsv "$output2" && cp bim_mRNAtarget.tsv "$output3" && cp cs_mRNAtarget.tsv "$output4" && cp not_found_interactions.tsv "$output5" ]]></command> <inputs> <param format="tabular,txt" name="RNAs_file" type="data" label="differentially expressed RNA molecules (RankProd output in our lncRNA workflow)" /> </inputs> <outputs> <data format="tabular" name="output1" label="Interactions' triplets (biotranslator input)"/> <data format="tabular" name="output2" label="Interactions' triplets (cytoscape input)"/> <data format="tabular" name="output3" label="mRNA reverse expressions (biotranslator input)"/> <data format="tabular" name="output4" label="mRNA reverse expressions (cytoscape input)"/> <data format="tabular" name="output5" label="RNAs not found in interactions' DBs (RiBlast input)"/> </outputs> </tool>