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view tcga_heatmap.xml @ 5:b2b5f193f5bd draft

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author enios
date Wed, 21 Apr 2021 10:54:52 +0000
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<tool id="tcga_heatmap" name="TCGA_HEATMAP" >
 <requirements>
     <container type="docker">bianca7/lncrna:tcga</container>
 </requirements>
 <description>Test your signature on TCGA data</description>
 <stdio>
   <exit_code range="1:" level="fatal" />
 </stdio>
 <command><![CDATA[ Rscript /Heatmap1.R -g "$signature" -c "$cancer_type" -R "/$output1" -o "/$output2"
  ]]></command>
  <inputs>
   <param format="tabular,txt" name="signature" type="data" label="gene signature" />
   <param name="cancer_type" type="text" label="TCGA-cancer project" />
 </inputs>
 <outputs>
    <data format="pdf" name="output1" label="Heatmap"/>
    <data format="html" name="output2" label="Heatmap"/>
 </outputs>
</tool>