view ezlncpred.xml @ 6:f4dea7954ab6 draft

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<tool id="ezlncpred" name="ezLncPred" >
    <description>"ezLncPred"</description>
    <requirements>
        <container type="docker">eniosorg/bim:ezlncpred</container>
    </requirements>
    <command><![CDATA[ezLncPred -i $fasta_file -o out $model
      #if $model =="CPAT"
        -p Human
      #end if
      #if $model =="CPPred"
        -p Human
      #end if
      #if $model =="longdist"
        -z 200 -p Human
      #end if
      && mv out $out
   ]]></command>
   <inputs>
     <param type="data" name="fasta_file" format="fasta" />
     <param type="select" name="model">
       <!--option value="CNCI">CNCI</option>
       <option value="CPC2">CPC2</option-->
       <option value="CPAT">CPAT</option>
       <option value="lgc">lgc</option>
       <option value="CPPred">CPPred</option>
       <!--option value="GFStack">GFStack</option-->
       <option value="longdist">longdist</option>
       <!--option value="PLEK">PLEK</option>
       <option value="LncADeep">LncDeep</option-->
     </param>
  </inputs>
  <outputs>
    <data name="out" format="txt" from_work_directory="out"/>
  </outputs>
</tool>