Mercurial > repos > enios > nc_rna

view tcga_heatmap.xml @ 24:8ec95406dfc1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author enios
date Thu, 27 May 2021 10:16:04 +0000
parents b2b5f193f5bd
children
line wrap: on
line source

<tool id="tcga_heatmap" name="TCGA_HEATMAP" >
 <requirements>
     <container type="docker">bianca7/lncrna:tcga</container>
 </requirements>
 <description>Test your signature on TCGA data</description>
 <stdio>
   <exit_code range="1:" level="fatal" />
 </stdio>
 <command><![CDATA[ Rscript /Heatmap1.R -g "$signature" -c "$cancer_type" -R "/$output1" -o "/$output2"
  ]]></command>
  <inputs>
   <param format="tabular,txt" name="signature" type="data" label="gene signature" />
   <param name="cancer_type" type="text" label="TCGA-cancer project" />
 </inputs>
 <outputs>
    <data format="pdf" name="output1" label="Heatmap"/>
    <data format="html" name="output2" label="Heatmap"/>
 </outputs>
</tool>