Mercurial > repos > enios > nc_rna
changeset 24:8ec95406dfc1 draft default tip
Deleted selected files
| author | enios |
|---|---|
| date | Thu, 27 May 2021 10:16:04 +0000 |
| parents | 954376f8db01 |
| children | |
| files | biotranslator.xml |
| diffstat | 1 files changed, 0 insertions(+), 74 deletions(-) [+] |
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--- a/biotranslator.xml Wed May 26 16:15:44 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,74 +0,0 @@ -<tool id="biotranslator" name="biotranslator" > - <requirements> - <container type="docker">eniosorg/bim:biotranslator_</container> - </requirements> - <description>** Biotranslator **</description> - <command><![CDATA[ python /code/wrapper.py - --authtoken $authtoken - --dataset $dataset - --project $project - --idtype '$id_type' - --organism '$organism' - --terms '$terms' - --foldchange '$fold_change' - --correctedpvalue '$correctedpvalue' - --title '$exp_title' - --description '$description' - && cp *.html $html - && tar -cvf $results * - ]]></command> - <inputs> - <param type="text" name="authtoken" value="7dajfghfhjs7fgh" label="Give your bionfominer authentication token "/> - <param type="float" name="correctedpvalue" value="0.05" label="correctedpvalue"/> - <param type="data" name="dataset" format="csv,txt,tabular,semicolon" label="gene list file"/> - <param type="text" name="description" value="description" label="description"/> - <param type="text" name="exp_title" value="exp_title" label="exp_title"/> - <param type="select" name="fold_change" value="None" label="foldchange"> - <option value="None">None</option> - <option value="Log">Log</option> - <option value="Linear">Linear</option> - </param> - <param type="select" name="organism" value="Homo sapiens" label="organism"> - <option value="Homo sapiens">Homo sapiens</option> - <option value="Mus musculus">Mus musculus</option> - <option value="Rattus novergicus">Rattus novergicus</option> - <option value="Bos taurus">Bos taurus</option> - <option value="Sus scrofa">Sus scrofa</option> - <option value="Gallus gallus">Gallus gallus</option> - <option value="Danio rerio">Danio rerio</option> - <option value="Drosophila melanogaster">Drosophila melanogaster</option> - <option value="Caenorhabditis elegans">Caenorhabditis elegans</option> - <option value="Saccharomyses serevisiae">Saccharomyses serevisiae</option> - <option value="Schizosaccharomyses pombe">Schizosaccharomyses pombe</option> - <option value="Aspergillus nidulans">Aspergillus nidulans</option> - <option value="Magnaporthe grisea">Magnaporthe grisea</option> - <option value="Arabidopsis thaliana">Arabidopsis thaliana</option> - <option value="Oryza sativa Japonica">Oryza sativa Japonica</option> - <option value="Glycine max">Glycine max</option> - <option value="Hellanthus annuus">Hellanthus annuus</option> - <option value="Sorghum bicolor">Sorghum bicolor</option> - <option value="Zea mays">Zea mays</option> - <option value="Beta vulgaris">Beta vulgaris</option> - </param> - <param type="select" name="id_type" value="Gene Symbol" label="Id type"> - <option value="Gene Symbol">Gene Symbol</option> - <option value="Entrez Gene id">Entrez Gene id</option> - <option value="Ensembl Gene id">Ensembl Gene id</option> - </param> - <param type="text" name="project" value="hgjahgdf7886sjhfg" label="Provide a bioinfominer project ID"/> - <param type="select" name="terms" value="Gene Ontology" label="terms"> - <option value="Gene Ontology">Gene Ontology</option> - <option value="MGI Mammalian Phenotype">MGI Mammalian Phenotype</option> - <option value="Human Phenotype Ontology">Human Phenotype Ontology</option> - <option value="Plant Ontology">Plant Ontology</option> - <option value="Zebrafish Ontology">Zebrafish Ontology</option> - </param> - </inputs> - <outputs> - <data name="html" format="html" /> - <data name="results" format="tar" /> - <!--data name="analysis" format="tsv" /> - <data name="extended_analysis" format="txt" /> - <data name="visualization" format="html" /--> - </outputs> -</tool>