Mercurial > repos > enios > nc_rna

changeset 15:97abe4dc3ee3 draft

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Uploaded
author enios
date Sat, 22 May 2021 07:30:24 +0000
parents fad6c1077c8c
children 24d0a81802d6
files discardfasta.xml
diffstat 1 files changed, 17 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/discardfasta.xml	Sat May 22 07:30:24 2021 +0000
@@ -0,0 +1,17 @@
+<tool id="discardfasta" name="discardFasta" >
+    <description>"discard_fasta_sequences_less_than_specific_length"</description>
+    <requirements>
+        <container type="docker">bianca7/lncrna:discard_fasta</container>
+    </requirements>
+    <command><![CDATA[perl /discard_fasta.pl $length $fasta_file > $out
+   ]]></command>
+   <inputs>
+     <param type="data" name="fasta_file" format="fasta" />
+     <param type="integer" value="200" name="length" label="length cut off" />
+  </inputs>
+  <outputs>
+    <data name="out" format="fasta" />
+  </outputs>
+</tool>
+
+