comparison Dockerfile @ 4:2ff4a39ea41b draft

planemo upload commit 1bf6938d35be8e67e317f504f43f281ce7dc06e6

3:0ea626b10557

FROM google/cloud-sdk:latest

RUN apt-get update && apt-get install -y python3 netcat-openbsd

# Create galaxy user and home directory
RUN useradd -m -s /bin/bash galaxy

# Create a directory for our scripts that galaxy user can access
RUN mkdir -p /opt/galaxy-tools && chown galaxy:galaxy /opt/galaxy-tools

# Create gcloud config directory with proper permissions
RUN mkdir -p /home/galaxy/.config/gcloud && \
    chown -R galaxy:galaxy /home/galaxy/.config && \
    chmod -R 777 /home/galaxy/.config

# Also create a temporary gcloud config directory as backup
RUN mkdir -p /tmp/gcloud-config && chmod 777 /tmp/gcloud-config

# Copy files to the galaxy-accessible directory
COPY gcp_batch_netcat.py /opt/galaxy-tools/
COPY gcp_batch_netcat.xml /opt/galaxy-tools/

# Ensure galaxy user can execute the script
RUN chown galaxy:galaxy /opt/galaxy-tools/* && chmod +x /opt/galaxy-tools/gcp_batch_netcat.py

# Switch to galaxy user
USER galaxy

# Set environment variables for gcloud configuration
ENV CLOUDSDK_CONFIG=/tmp/gcloud-config
ENV HOME=/home/galaxy

# Set working directory
WORKDIR /opt/galaxy-tools

ENTRYPOINT ["python3", "/opt/galaxy-tools/gcp_batch_netcat.py"]

4:2ff4a39ea41b

FROM google/cloud-sdk:latest

RUN apt-get update && apt-get install -y python3 python3-pip netcat-openbsd

RUN pip3 install --break-system-packages google-cloud-batch

RUN groupadd -g 10001 galaxy && useradd -u 10001 -g 10001 -m -s /bin/bash galaxy

# Add bash alias for ll
RUN echo "alias ll='ls -l'" >> /home/galaxy/.bashrc && \
    chown galaxy:galaxy /home/galaxy/.bashrc

USER galaxy