Mercurial > repos > enis > gcp_batch_netcat

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planemo upload for repository https://github.com/afgane/gcp_batch_netcat commit 2435de746d841f314b70f6257de0a3abaf77ec90
author enis
date Fri, 15 Aug 2025 13:14:31 +0000
parents 56543de39954
children
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12:56543de39954 13:be2f70ae6749
16 - Verifying NFSv4.2 mounting with proper security contexts 16 - Verifying NFSv4.2 mounting with proper security contexts
17 - Testing specific Galaxy reference data file access (e.g., Arabidopsis TAIR10) 17 - Testing specific Galaxy reference data file access (e.g., Arabidopsis TAIR10)
18 - Troubleshooting connectivity issues in Galaxy deployments on Kubernetes 18 - Troubleshooting connectivity issues in Galaxy deployments on Kubernetes
19 - Debugging firewall rules, NFS export configurations, and CVMFS client setup 19 - Debugging firewall rules, NFS export configurations, and CVMFS client setup
20 - Comprehensive Network Diagnostics: DNS resolution, routing, and external connectivity 20 - Comprehensive Network Diagnostics: DNS resolution, routing, and external connectivity
21 - Custom VM Integration: Uses galaxy-k8s-boot-v2025-08-12 image with pre-configured CVMFS client 21 - Custom VM Integration: Uses (e.g., `galaxy-k8s-boot-v2025-08-12`) image with pre-configured CVMFS client and NFS support
22
23 The tool is available in the Main Tool Shed at: 22 The tool is available in the Main Tool Shed at:
24 https://toolshed.g2.bx.psu.edu/view/enis/gcp_batch_netcat/ 23 https://toolshed.g2.bx.psu.edu/view/enis/gcp_batch_netcat/
25 24
26 ## For use with the Galaxy Helm Chart 25 ## For use with the Galaxy Helm Chart
27 26
113 - A VPC network and subnet where both Galaxy and the NFS server can communicate 112 - A VPC network and subnet where both Galaxy and the NFS server can communicate
114 - A service account with "Batch Job Editor" role 113 - A service account with "Batch Job Editor" role
115 - Downloaded JSON key file for the service account 114 - Downloaded JSON key file for the service account
116 - Access to the custom VM image: e.g., `galaxy-k8s-boot-v2025-08-12` 115 - Access to the custom VM image: e.g., `galaxy-k8s-boot-v2025-08-12`
117 116
118 ### Network Configuration
119 - Firewall rule allowing traffic from the Batch subnet to NFS server:
120 ```
121 gcloud compute firewall-rules create allow-nfs-from-batch \
122 --network=NETWORK_NAME \
123 --allow=tcp:2049
124 ```
125
126 ### NFS Server Setup 117 ### NFS Server Setup
127 - The NFS service must be accessible via LoadBalancer with external IP (typically private within VPC) 118 - The NFS service must be accessible via LoadBalancer with external IP (typically private within VPC)
128 - NFS server should support NFSv4.2 with sec=sys security 119 - NFS server should support NFSv4.2 with sec=sys security
129 - Exports should be configured to allow access from GCP Batch subnet 120 - Exports should be configured to allow access from GCP Batch subnet
130 ``` 121 ```