diff Dockerfile @ 3:0ea626b10557 draft

planemo upload for repository https://github.com/afgane/gcp_batch_netcat

--- a/Dockerfile	Tue Jul 15 21:10:05 2025 +0000
+++ b/Dockerfile	Mon Jul 21 15:13:09 2025 +0000
@@ -2,7 +2,35 @@
 
 RUN apt-get update && apt-get install -y python3 netcat-openbsd
 
-COPY gcp_batch_netcat.py /usr/bin/
-COPY gcp_batch_netcat.xml /usr/bin/
+# Create galaxy user and home directory
+RUN useradd -m -s /bin/bash galaxy
+
+# Create a directory for our scripts that galaxy user can access
+RUN mkdir -p /opt/galaxy-tools && chown galaxy:galaxy /opt/galaxy-tools
+
+# Create gcloud config directory with proper permissions
+RUN mkdir -p /home/galaxy/.config/gcloud && \
+    chown -R galaxy:galaxy /home/galaxy/.config && \
+    chmod -R 777 /home/galaxy/.config
+
+# Also create a temporary gcloud config directory as backup
+RUN mkdir -p /tmp/gcloud-config && chmod 777 /tmp/gcloud-config
 
-ENTRYPOINT ["python3", "/usr/bin/gcp_batch_netcat.py"]
+# Copy files to the galaxy-accessible directory
+COPY gcp_batch_netcat.py /opt/galaxy-tools/
+COPY gcp_batch_netcat.xml /opt/galaxy-tools/
+
+# Ensure galaxy user can execute the script
+RUN chown galaxy:galaxy /opt/galaxy-tools/* && chmod +x /opt/galaxy-tools/gcp_batch_netcat.py
+
+# Switch to galaxy user
+USER galaxy
+
+# Set environment variables for gcloud configuration
+ENV CLOUDSDK_CONFIG=/tmp/gcloud-config
+ENV HOME=/home/galaxy
+
+# Set working directory
+WORKDIR /opt/galaxy-tools
+
+ENTRYPOINT ["python3", "/opt/galaxy-tools/gcp_batch_netcat.py"]