diff log1.txt @ 11:fe0bf22037a5 draft

planemo upload for repository https://github.com/afgane/gcp_batch_netcat commit f730cbb207e028a5d4fd982fe65ece7345af4879

--- a/log1.txt	Tue Aug 12 16:22:41 2025 +0000
+++ b/log1.txt	Thu Aug 14 16:39:36 2025 +0000
@@ -1,31 +1,29 @@
-2025-08-11 19:47:27.404 WGST
-is only available from another source
-2025-08-11 19:47:27.404 WGST
-2025-08-11 19:47:27.407 WGST
-E: Package 'docker-ce' has no installation candidate
-2025-08-11 19:47:27.407 WGST
-E: Package 'docker-ce-cli' has no installation candidate
-2025-08-11 19:47:27.407 WGST
-E: Unable to locate package containerd.io
-2025-08-11 19:47:27.407 WGST
-E: Couldn't find any package by glob 'containerd.io'
-2025-08-11 19:47:27.407 WGST
-E: Couldn't find any package by regex 'containerd.io'
-2025-08-11 19:47:27.407 WGST
-E: Unable to locate package docker-compose-plugin
-2025-08-11 19:47:27.408 WGST
-Task action/STARTUP/0/0/group0 runnable 0 wait error: exit status 100
-2025-08-11 19:47:27.408 WGST
-Task action/STARTUP/0/0/group0 runnable 0 exited with status 100
-2025-08-11 19:47:27.408 WGST
-Task action/STARTUP/0/0/group0 runnable 0 execution err: command failed with exitCode 100
-2025-08-11 19:47:27.408 WGST
-Task action/STARTUP/0/0/group0 background runnables all exited on their own.
-2025-08-11 19:47:27.408 WGST
-Task action/STARTUP/0/0/group0: failed runnables [0]
-2025-08-11 19:47:27.408 WGST
-Scheduler reported task "action/STARTUP/0/0/group0"
-2025-08-11 19:47:27.408 WGST
-report agent state: metadata:{parent:"projects/526897014808/locations/us-east4" zone:"us-east4-b" instance:"netcat-job-bf1b499-5d135274-e581-45210-group0-0-mpfx" instance_id:447085315223971911 creation_time:{seconds:1754945238 nanos:445714106} creator:"projects/526897014808/regions/us-east4/instanceGroupManagers/netcat-job-bf1b499-5d135274-e581-45210-group0-0" version:"cloud-batch-agent_20250723.00_p00" os_release:{key:"ID" value:"ubuntu"} os_release:{key:"NAME" value:"Ubuntu"} os_release:{key:"VERSION" value:"24.04.3 LTS (Noble Numbat)"} os_release:{key:"VERSION_CODENAME" value:"noble"} os_release:{key:"VERSION_ID" value:"24.04"} machine_type:"e2-highcpu-2"} agent_info:{state:AGENT_RUNNING job_id:"netcat-job-bf1b499-5d135274-e581-45210" user_project_num:526897014808 tasks:{task_id:"action/STARTUP/0/0/group0" task_status:{state:FAILED status_events:{type:"ASSIGNED" description:"task action/STARTUP/0/0/group0 ASSIGNED" event_time:{seconds:1754945238 nanos:621564382} task_state:ASSIGNED} status_events:{type:"RUNNING" description:"task action/STARTUP/0/0/group0 RUNNING" event_time:{seconds:1754945238 nanos:621571338} task_state:RUNNING} status_events:{type:"FAILED" description:"failed runnables [0]" event_time:{seconds:1754945247 nanos:408496955} task_execution:{exit_code:100 stderr_snippet:"e-plugin\nouldn't find any package by regex 'containerd.io'\nE: Unable to locate package docker-compos"} task_state:FAILED}}} report_time:{seconds:1754945247 nanos:408751935} task_group_id:"group0"} agent_timing_info:{boot_time:{seconds:1754945215 nanos:397254370} script_startup_time:{seconds:1754945232 nanos:497254370} agent_startup_time:{seconds:1754945238 nanos:445714106}}
-2025-08-11 19:47:27.484 WGST
-Server response for instance 447085315223971911: tasks:{task:"action/STARTUP/0/0/group0" status:{state:FAILED status_events:{type:"ASSIGNED" description:"task action/STARTUP/0/0/group0 ASSIGNED" event_time:{seconds:1754945238 nanos:621564382} task_state:ASSIGNED} status_events:{type:"RUNNING" description:"task action/STARTUP/0/0/group0 RUNNING" event_time:{seconds:1754945238 nanos:621571338} task_state:RUNNING} status_events:{type:"FAILED" description:"failed runnables [0]" event_time:{seconds:1754945247 nanos:408496955} task_execution:{exit_code:100 stderr_snippet:"e-plugin\nouldn't find any package by regex 'containerd.io'\nE: Unable to locate package docker-compos"} task_state:FAILED}} intended_state:ASSIGNED job_uid:"netcat-job-bf1b499-5d135274-e581-45210" task_group_id:"group0" location:"us-east4" job_id:"netcat-job-bf1b4994-8ab8-4361-91b3-c7b90ce3a02f"} use_batch_monitored_resource:true.
[phone]:20:55.181 WGST
+✓ Found: export directory
[phone]:20:55.187 WGST
+total 4
[phone]:20:55.187 WGST
+drwxr-xr-x 3 nobody nogroup 0 Aug 12 15:49 .
[phone]:20:55.187 WGST
+drwxrwsrwx 14 nobody nogroup 4096 Aug 14 15:12 pvc-aa9a2d4e-2066-40ec-85de-8eb13c8cb9a5
[phone]:20:55.188 WGST
+Looking for PVC directories in export...
[phone]:21:06.333 WGST
+report agent state: metadata:{parent:"projects/526897014808/locations/us-east4" zone:"us-east4-b" instance:"netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0-6rs8" instance_id:3148160217266536671 creation_time:{seconds:1755184743 nanos:205126122} creator:"projects/526897014808/regions/us-east4/instanceGroupManagers/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0" version:"cloud-batch-agent_20250723.00_p00" os_release:{key:"ID" value:"ubuntu"} os_release:{key:"NAME" value:"Ubuntu"} os_release:{key:"VERSION" value:"24.04.3 LTS (Noble Numbat)"} os_release:{key:"VERSION_CODENAME" value:"noble"} os_release:{key:"VERSION_ID" value:"24.04"} machine_type:"e2-medium"} agent_info:{state:AGENT_RUNNING job_id:"netcat-job-9b31e9b-e30f48bf-ed6a-41470" user_project_num:526897014808 tasks:{task_id:"action/STARTUP/0/0/group0" task_status:{state:SUCCEEDED status_events:{type:"ASSIGNED" description:"task action/STARTUP/0/0/group0 ASSIGNED" event_time:{seconds:1755184743 nanos:486748362} task_state:ASSIGNED} status_events:{type:"RUNNING" description:"task action/STARTUP/0/0/group0 RUNNING" event_time:{seconds:1755184743 nanos:486756403} task_state:RUNNING} status_events:{type:"SUCCEEDED" description:"succeeded" event_time:{seconds:1755184743 nanos:953481712} task_state:SUCCEEDED}}} tasks:{task_id:"task/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0/0/0" task_status:{state:RUNNING status_events:{type:"ASSIGNED" description:"task task/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0/0/0 ASSIGNED" event_time:{seconds:1755184746 nanos:423966399} task_state:ASSIGNED} status_events:{type:"RUNNING" description:"task task/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0/0/0 RUNNING" event_time:{seconds:1755184746 nanos:423969481} task_state:RUNNING}}} report_time:{seconds:1755184866 nanos:332761176} task_group_id:"group0"} agent_timing_info:{boot_time:{seconds:1755184712 nanos:999352912} script_startup_time:{seconds:1755184734 nanos:429352912} agent_startup_time:{seconds:1755184743 nanos:205126122}}
[phone]:21:06.416 WGST
+Server response for instance 3148160217266536671: tasks:{task:"action/STARTUP/0/0/group0" status:{state:SUCCEEDED status_events:{type:"ASSIGNED" description:"task action/STARTUP/0/0/group0 ASSIGNED" event_time:{seconds:1755184743 nanos:486748362} task_state:ASSIGNED} status_events:{type:"RUNNING" description:"task action/STARTUP/0/0/group0 RUNNING" event_time:{seconds:1755184743 nanos:486756403} task_state:RUNNING} status_events:{type:"SUCCEEDED" description:"succeeded" event_time:{seconds:1755184743 nanos:953481712} task_state:SUCCEEDED}} intended_state:ASSIGNED job_uid:"netcat-job-9b31e9b-e30f48bf-ed6a-41470" task_group_id:"group0" location:"us-east4" job_id:"netcat-job-9b31e9b3-b4ac-4a1c-8eb6-ed0104b17750"} tasks:{task:"task/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0/0/0" status:{state:RUNNING status_events:{type:"ASSIGNED" description:"task task/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0/0/0 ASSIGNED" event_time:{seconds:1755184746 nanos:423966399} task_state:ASSIGNED} status_events:{type:"RUNNING" description:"task task/netcat-job-9b31e9b-e30f48bf-ed6a-41470-group0-0/0/0 RUNNING" event_time:{seconds:1755184746 nanos:423969481} task_state:RUNNING}} intended_state:ASSIGNED job_uid:"netcat-job-9b31e9b-e30f48bf-ed6a-41470" task_group_id:"group0" location:"us-east4" job_id:"netcat-job-9b31e9b3-b4ac-4a1c-8eb6-ed0104b17750"} use_batch_monitored_resource:true.
[phone]:21:15.570 WGST
+/mnt/nfs/export/pvc-aa9a2d4e-2066-40ec-85de-8eb13c8cb9a5
[phone]:21:15.570 WGST
[phone]:21:15.570 WGST
+=== Looking for Galaxy directories ===
[phone]:21:15.571 WGST
+✗ Not found: database
[phone]:21:15.571 WGST
+✗ Not found: database/files
[phone]:21:15.571 WGST
+✗ Not found: database/objects
[phone]:21:15.576 WGST
+✗ Not found: tools
[phone]:21:15.576 WGST
+✗ Not found: shed_tools