Mercurial > repos > erasmus-medical-center > dr_disco
comparison dr-disco_fix.xml @ 3:5348cfd3ba5c draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b6ccc6d8a9a9061207040561b494b7cf2ee3f885
| author | erasmus-medical-center |
|---|---|
| date | Thu, 10 Aug 2017 05:38:27 -0400 |
| parents | 173ca9768e22 |
| children | 922b52cf9b35 |
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| 2:173ca9768e22 | 3:5348cfd3ba5c |
|---|---|
| 6 | 6 |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 8 <expand macro="version_command" /> | 8 <expand macro="version_command" /> |
| 9 | 9 |
| 10 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
| 11 dr-disco fix '${alignment_fixed}' '${star_discordant_alignment}' | 11 dr-disco fix |
| 12 '${star_discordant_alignment}' | |
| 13 '${alignment_fixed}' | |
| 12 ]]></command> | 14 ]]></command> |
| 15 | |
| 13 <inputs> | 16 <inputs> |
| 14 <param name="star_discordant_alignment" type="data" format="bam" label="Discordant alignment file of STAR" /> | 17 <param name="star_discordant_alignment" type="data" format="bam" label="Discordant alignment file of STAR" /> |
| 15 </inputs> | 18 </inputs> |
| 19 | |
| 16 <outputs> | 20 <outputs> |
| 17 <data name="alignment_fixed" format="bam" label="${tool.name} on ${star_discordant_alignment}" /> | 21 <data name="alignment_fixed" format="bam" label="${tool.name} on ${star_discordant_alignment}" /> |
| 18 </outputs> | 22 </outputs> |
| 19 | 23 |
| 20 <tests> | 24 <tests> |