Mercurial > repos > erasmus-medical-center > dr_disco
comparison dr-disco_integrate.xml @ 7:6b87499054f6 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 39fc49ee3ea0645de59259c1a3bc0d2f1fcdc23c
| author | erasmus-medical-center |
|---|---|
| date | Thu, 14 Sep 2017 06:24:47 -0400 |
| parents | 76a3992021c1 |
| children | 922b52cf9b35 |
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| 6:d58d99a070ce | 7:6b87499054f6 |
|---|---|
| 17 '${dr_disco_classify_output}' | 17 '${dr_disco_classify_output}' |
| 18 '${dr_disco_integrate_output}' | 18 '${dr_disco_integrate_output}' |
| 19 ]]></command> | 19 ]]></command> |
| 20 | 20 |
| 21 <inputs> | 21 <inputs> |
| 22 <param name="dr_disco_classify_output" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> | 22 <param name="dr_disco_classify_output" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> |
| 23 <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes annotated: gene_name, transcript_id and transcript_version"/> | 23 <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes annotated: gene_name, transcript_id and transcript_version"/> |
| 24 </inputs> | 24 </inputs> |
| 25 | 25 |
| 26 <outputs> | 26 <outputs> |
| 27 <data name="dr_disco_integrate_output" format="tabular" label="${tool.name} on ${dr_disco_classify_output.name}" /> | 27 <data name="dr_disco_integrate_output" format="tabular" label="${tool.name} on ${dr_disco_classify_output.name}" /> |