Mercurial > repos > erasmus-medical-center > dr_disco
comparison dr-disco_detect.xml @ 6:d58d99a070ce draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit 9e318ac5d6b229cf04f6d78d897231aad4cf92e2
| author | erasmus-medical-center |
|---|---|
| date | Thu, 14 Sep 2017 05:55:35 -0400 |
| parents | 5348cfd3ba5c |
| children | 922b52cf9b35 |
comparison
equal
deleted
inserted
replaced
| 5:76a3992021c1 | 6:d58d99a070ce |
|---|---|
| 13 --min-e-score '${min_e_score}' | 13 --min-e-score '${min_e_score}' |
| 14 '${star_discordant_alignment_fixed}' | 14 '${star_discordant_alignment_fixed}' |
| 15 '${output_fusion_events}' | 15 '${output_fusion_events}' |
| 16 ]]></command> | 16 ]]></command> |
| 17 <inputs> | 17 <inputs> |
| 18 <param name="star_discordant_alignment_fixed" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> | 18 <param name="star_discordant_alignment_fixed" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> |
| 19 <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0" | 19 <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0" |
| 20 label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." /> | 20 label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." /> |
| 21 </inputs> | 21 </inputs> |
| 22 | 22 |
| 23 <outputs> | 23 <outputs> |