diff test-data/classify_test_16.test-07.out.dbed @ 3:5348cfd3ba5c draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b6ccc6d8a9a9061207040561b494b7cf2ee3f885

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/classify_test_16.test-07.out.dbed	Thu Aug 10 05:38:27 2017 -0400
@@ -0,0 +1,37 @@
+chr-A	pos-A	direction-A	pos-A-acceptor	pos-A-donor	chr-B	pos-B	direction-B	pos-A-acceptor	pos-A-donor	genomic-distance	filter-status	circRNA	intronic/exonic	score	soft+hardclips	n-split-reads	n-discordant-reads	n-edges	n-nodes-A	n-nodes-B	n-splice-junc-A	n-splice-junc-B	entropy-bp-edge	entropy-all-edges	bp-pos-stddev	entropy-disco-bps	lr-A-slope	lr-A-intercept	lr-A-rvalue	lr-A-pvalue	lr-A-stderr	lr-B-slope	lr-B-intercept	lr-B-rvalue	lr-B-pvalue	lr-B-stderr	disco/split	clips/score	nodes/edge	data-structure
+chr21	39817544	-	140	0	chr21	42880007	+	0	140	3062463	valid	linear	exonic	253	170	85	6	5	2	4	1	0	0.8111	0.8497	0.0000	0.9535	0.7247	63.7843	0.8440	0.0000	0.0559	0.3651	17.3030	0.8378	0.0000	0.0289	0.0706	0.3360	1.2000	chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1)
+chr21	39877811	-	98	0	chr21	42873374	+	0	98	2995563	valid	linear	intronic	91	42	21	28	1	1	1	0	0	0.9528	0.9528	0.0000	0.8200	2.9207	17.3314	0.9125	0.0000	0.1910	1.5880	68.1747	0.8769	0.0000	0.1269	1.3333	0.2308	2.0000	chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9)
+chr21	42861433	+	6	18	chr21	42866505	-	18	6	5072	n_discordant_reads=2<3	circular	exonic	41	30	14	2	7	5	6	1	2	1.0000	0.9375	18.7474	0.7500	26.9000	3.0000	0.9425	0.0164	5.5097	20.1000	42.8000	0.8833	0.0470	6.1587	0.1429	0.3659	1.5714	chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2)
+chr21	39836011	+	0	8	chr21	39836545	-	8	0	534	n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4	circular	intronic	17	12	6	0	2	2	2	0	0	0.4056	0.6934	25.3065	0.0000	1.5000	29.5000	0.7746	0.2254	0.8660	0.0000	93.0000	0.0000	1.0000	0.0000	0.0000	0.3529	2.0000	chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)
+chr21	39875880	+	0	6	chr21	39876476	-	6	0	596	entropy=0.0<0.6839,n_support=4<8	circular	intronic	12	8	4	0	2	2	2	0	0	0.0000	0.4056	0.0000	0.0000	0.0000	68.0000	0.0000	1.0000	0.0000	0.0000	58.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)
+chr21	39851814	+	0	6	chr21	39852667	-	6	0	853	entropy=0.0<0.6835,n_support=3<7	circular	intronic	9	6	3	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	49.0000	0.0000	1.0000	0.0000	0.0000	77.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3)
+chr21	39859611	+	0	6	chr21	39860278	-	6	0	667	entropy=0.0<0.6835,n_support=3<7	circular	intronic	9	6	3	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	40.0000	0.0000	1.0000	0.0000	0.0000	86.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3)
+chr21	39883871	+	0	6	chr21	39885212	-	6	0	1341	entropy=0.0<0.6835,n_support=3<7	circular	intronic	9	6	3	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	94.0000	0.0000	1.0000	0.0000	0.0000	32.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3)
+chr21	42843732	+	0	6	chr21	42870116	-	6	0	26384	entropy=0.0<0.6835,n_support=3<7	circular	intronic	9	11	3	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	45.0000	0.0000	1.0000	0.0000	0.0000	72.0000	0.0000	1.0000	0.0000	0.0000	0.6111	2.0000	chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3)
+chr21	39755685	+	0	6	chr21	39775541	-	6	0	19856	entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8	circular	intronic	7	4	2	1	1	1	1	0	0	0.5794	0.5794	0.0000	1.0000	19.0000	81.6667	0.8660	0.3333	10.9697	1.5000	34.5000	0.8660	0.3333	0.8660	0.5000	0.2857	2.0000	chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2)
+chr21	39834195	+	0	4	chr21	39840659	-	4	0	6464	n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4	circular	intronic	6	4	2	0	1	1	1	0	0	1.0000	1.0000	0.0000	0.0000	2.0000	54.0000	1.0000	0.0000	0.0000	0.0000	53.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)
+chr21	39842038	+	0	4	chr21	39843053	-	4	0	1015	n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4	circular	intronic	6	4	2	0	1	1	1	0	0	1.0000	1.0000	0.0000	0.0000	0.0000	80.0000	0.0000	1.0000	0.0000	8.0000	38.0000	1.0000	0.0000	0.0000	0.0000	0.3333	2.0000	chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2)
+chr21	39850667	+	0	4	chr21	39854268	-	4	0	3601	n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4	circular	intronic	6	4	2	0	1	1	1	0	0	1.0000	1.0000	0.0000	0.0000	0.0000	46.0000	0.0000	1.0000	0.0000	1.0000	79.0000	1.0000	0.0000	0.0000	0.0000	0.3333	2.0000	chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)
+chr21	42877474	+	0	4	chr21	42878062	-	4	0	588	n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4	circular	intronic	6	4	2	0	1	1	1	0	0	1.0000	1.0000	0.0000	0.0000	0.0000	97.0000	0.0000	1.0000	0.0000	2.0000	27.0000	1.0000	0.0000	0.0000	0.0000	0.3333	2.0000	chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)
+chr21	39766042	+	0	4	chr21	39766803	-	4	0	761	entropy=0.0<0.6832,n_support=2<7	circular	intronic	6	4	2	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	56.0000	0.0000	1.0000	0.0000	0.0000	70.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)
+chr21	39797816	+	0	4	chr21	39803772	-	4	0	5956	entropy=0.0<0.6832,n_support=2<7	circular	intronic	6	4	2	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	28.0000	0.0000	1.0000	0.0000	0.0000	98.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)
+chr21	39874520	+	2	2	chr21	39875907	-	2	2	1387	n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4	circular	intronic	5	4	2	0	1	1	1	0	0	1.0000	1.0000	45.4588	0.0000	0.0000	45.0000	0.0000	1.0000	0.0000	2.0000	79.0000	1.0000	0.0000	0.0000	0.0000	0.4000	2.0000	chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)
+chr21	39844342	+	2	0	chr21	39845160	-	0	2	818	n_support=2<8	circular	intronic	3	3	1	1	2	2	2	0	0	0.0000	1.0000	0.0000	0.0000	0.0000	73.0000	0.0000	1.0000	0.0000	0.0000	53.0000	0.0000	1.0000	0.0000	1.0000	0.5000	2.0000	chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2)
+chr21	39768473	+	0	2	chr21	39768936	-	2	0	463	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	77.0000	0.0000	1.0000	0.0000	0.0000	49.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)
+chr21	39838727	+	0	2	chr21	39863701	-	2	0	24974	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	41.0000	0.0000	1.0000	0.0000	0.0000	56.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)
+chr21	39849621	+	0	2	chr21	39850505	-	2	0	884	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	52.0000	0.0000	1.0000	0.0000	0.0000	74.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1)
+chr21	39858845	+	0	2	chr21	39859592	-	2	0	747	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	41.0000	0.0000	1.0000	0.0000	0.0000	84.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)
+chr21	39863020	+	0	2	chr21	39863629	-	2	0	609	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	101.0000	0.0000	1.0000	0.0000	0.0000	25.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1)
+chr21	39871034	+	0	2	chr21	39877568	-	2	0	6534	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	31.0000	0.0000	1.0000	0.0000	0.0000	66.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)
+chr21	42836581	+	0	2	chr21	42839672	-	2	0	3091	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	19.0000	0.0000	1.0000	0.0000	0.0000	107.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)
+chr21	42853701	+	0	2	chr21	42860029	-	2	0	6328	entropy=0.0<0.6828,n_support=1<7	circular	intronic	3	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	22.0000	0.0000	1.0000	0.0000	0.0000	31.0000	0.0000	1.0000	0.0000	0.0000	0.3333	2.0000	chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1)
+chr21	42866483	-	0	2	chr21	42870116	-	2	0	3633	entropy=0.0<0.6828,n_support=1<7	linear	intronic	3	9	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	38.0000	0.0000	1.0000	0.0000	0.0000	88.0000	0.0000	1.0000	0.0000	0.0000	1.5000	2.0000	chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1)
+chr21	42839824	+	0	4	chr21	42840323	-	4	0	499	n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4	circular	intronic	2	2	0	2	1	1	1	0	0	1.0000	1.0000	0.0000	0.4056	44.0000	82.0000	1.0000	0.0000	0.0000	0.0000	120.0000	0.0000	1.0000	0.0000	40.0000	0.5000	2.0000	chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4)
+chr21	39770910	+	2	0	chr21	39771416	-	0	2	506	entropy=0.0<0.6827,n_support=1<7	circular	intronic	2	2	1	0	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	75.0000	0.0000	1.0000	0.0000	0.0000	48.0000	0.0000	1.0000	0.0000	0.0000	0.5000	2.0000	chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)
+chr21	39860702	-	4	0	chr21	42843890	+	0	4	2983188	entropy=0.0<0.6827,n_support=2<7	linear	intronic	2	0	0	2	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	40.0000	0.0000	2.0000	chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4)
+chr21	39781087	+	0	2	chr21	39782101	-	2	0	1014	entropy=0.0<0.6826,n_support=1<7	circular	intronic	1	0	0	1	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	20.0000	0.0000	2.0000	chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2)
+chr21	39846131	+	0	2	chr21	39846834	-	2	0	703	entropy=0.0<0.6826,n_support=1<7	circular	intronic	1	0	0	1	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	0.0000	39.0000	0.0000	1.0000	0.0000	20.0000	0.0000	2.0000	chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2)
+chr21	39853321	-	2	0	chr21	42851610	+	0	2	2998289	entropy=0.0<0.6826,n_support=1<7	linear	intronic	1	0	0	1	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	20.0000	0.0000	2.0000	chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2)
+chr21	42840341	+	0	2	chr21	42842586	-	2	0	2245	entropy=0.0<0.6826,n_support=1<7	circular	intronic	1	0	0	1	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	124.0000	0.0000	1.0000	0.0000	0.0000	124.0000	0.0000	1.0000	0.0000	20.0000	0.0000	2.0000	chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2)
+chr21	42843861	+	2	0	chr21	42845272	-	0	2	1411	entropy=0.0<0.6826,n_support=1<7	circular	intronic	1	0	0	1	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	65.0000	0.0000	1.0000	0.0000	0.0000	60.0000	0.0000	1.0000	0.0000	20.0000	0.0000	2.0000	chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2)
+chr21	42863757	+	0	2	chr21	42864220	-	2	0	463	entropy=0.0<0.6826,n_support=1<7	circular	intronic	1	0	0	1	1	1	1	0	0	0.0000	0.0000	0.0000	0.0000	0.0000	126.0000	0.0000	1.0000	0.0000	0.0000	123.0000	0.0000	1.0000	0.0000	20.0000	0.0000	2.0000	chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)