# HG changeset patch
# User erasmus-medical-center
# Date 1531848944 14400
# Node ID 810d464f9359498462e13868f26b0586a41c4541
# Parent  a9447e4a56348e839d0fcb89aaac977412f7c766
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/gfa_to_fa commit 1a253e02d30317fb231294b55291df79b1cda568

diff -r a9447e4a5634 -r 810d464f9359 gfa_to_fa.xml
--- a/gfa_to_fa.xml	Tue Jul 17 10:31:08 2018 -0400
+++ b/gfa_to_fa.xml	Tue Jul 17 13:35:44 2018 -0400
@@ -1,20 +1,18 @@
 <tool id="gfa_to_fa" name="GFA to Fasta" version="0.1.0">
     <description>Convert GFA files to Fasta </description>
     <command detect_errors="exit_code"><![CDATA[
-cat $in_gfa | python $convert > '$out_fa'
-]]>
-    </command>
+cat '$in_gfa' | python $convert > '$out_fa'
+    ]]></command>
     <configfiles>
         <configfile name="convert"><![CDATA[
 from __future__ import print_function
-import sys		
+import sys
 for line in sys.stdin:
     if line.startswith("S"):
         l,h,s,x = line.strip().split()
 	print("> " + h)
 	print(s)
-]]>
-        </configfile>
+        ]]></configfile>
     </configfiles>
     <inputs>
         <param name="in_gfa" type="data" format="tabular" label="Input GFA file" />