Mercurial > repos > erasmus-medical-center > miniasm
comparison miniasm.xml @ 1:f0a2f5a9b637 draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/miniasm commit 33213e41c656f608850a8b3aa42e1d9f0e0b7ca5
| author | erasmus-medical-center |
|---|---|
| date | Tue, 14 Aug 2018 09:01:59 -0400 |
| parents | b3ec520dc2ed |
| children |
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| 0:b3ec520dc2ed | 1:f0a2f5a9b637 |
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| 20 -F '$graph.finalDropRatio' | 20 -F '$graph.finalDropRatio' |
| 21 '$paf' > '$gfa' | 21 '$paf' > '$gfa' |
| 22 ]]></command> | 22 ]]></command> |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="readFile" type="data" format="fastq,fasta" optional="true" label="Sequence Reads" /> | 24 <param name="readFile" type="data" format="fastq,fasta" optional="true" label="Sequence Reads" /> |
| 25 <param name="paf" type="data" format="interval" label="PAF file" help="Pairwise mapping format" /> | 25 <param name="paf" type="data" format="tabular" label="PAF file" help="Pairwise mapping format" /> |
| 26 <section name="preselection" title="Preselection options"> | 26 <section name="preselection" title="Preselection options"> |
| 27 <param argument="minMatch" type="integer" value="100" label="Drop mappings having less than this number of matching bases" | 27 <param argument="minMatch" type="integer" value="100" label="Drop mappings having less than this number of matching bases" |
| 28 help="column 10 in PAF"/> | 28 help="column 10 in PAF"/> |
| 29 <param argument="minIden" type="float" value="0.05" label="During read filtering, ignore mappings with col10/col11 below this value" | 29 <param argument="minIden" type="float" value="0.05" label="During read filtering, ignore mappings with col10/col11 below this value" |
| 30 help="Ignored mappings are still used for read overlaps" /> | 30 help="Ignored mappings are still used for read overlaps" /> |