Mercurial > repos > erasmus-medical-center > mycrobiota
comparison test-data/summarylog1.txt @ 0:607c5e7e0a64 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
author | erasmus-medical-center |
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date | Wed, 13 Dec 2017 10:09:50 -0500 |
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-1:000000000000 | 0:607c5e7e0a64 |
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1 Linux version | |
2 | |
3 Using ReadLine | |
4 | |
5 Running 64Bit Version | |
6 | |
7 mothur v.1.36.1 | |
8 Last updated: 7/27/2015 | |
9 | |
10 by | |
11 Patrick D. Schloss | |
12 | |
13 Department of Microbiology & Immunology | |
14 University of Michigan | |
15 pschloss@umich.edu | |
16 http://www.mothur.org | |
17 | |
18 When using, please cite: | |
19 Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. | |
20 | |
21 Distributed under the GNU General Public License | |
22 | |
23 Type 'help()' for information on the commands that are available | |
24 | |
25 Type 'quit()' to exit program | |
26 Interactive Mode | |
27 | |
28 | |
29 mothur > summary.seqs(fasta=fasta.dat,processors=1) | |
30 | |
31 Using 1 processors. | |
32 | |
33 Start End NBases Ambigs Polymer NumSeqs | |
34 Minimum: 1 297 297 0 4 1 | |
35 2.5%-tile: 1 299 299 0 4 16 | |
36 25%-tile: 1 304 304 0 5 151 | |
37 Median: 1 305 305 0 5 301 | |
38 75%-tile: 1 305 305 0 5 451 | |
39 97.5%-tile: 1 307 307 0 5 586 | |
40 Maximum: 1 312 312 0 6 600 | |
41 Mean: 1 304.715 304.715 0 4.94833 | |
42 # of Seqs: 600 | |
43 | |
44 Output File Names: | |
45 fasta.summary | |
46 | |
47 It took 0 secs to summarize 600 sequences. | |
48 quit | |
49 | |
50 mothur > quit |