Mercurial > repos > erasmus-medical-center > mycrobiota
diff test-data/summarylog2.txt @ 0:607c5e7e0a64 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5
author | erasmus-medical-center |
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date | Wed, 13 Dec 2017 10:09:50 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/summarylog2.txt Wed Dec 13 10:09:50 2017 -0500 @@ -0,0 +1,50 @@ +Linux version + +Using ReadLine + +Running 64Bit Version + +mothur v.1.36.1 +Last updated: 7/27/2015 + +by +Patrick D. Schloss + +Department of Microbiology & Immunology +University of Michigan +pschloss@umich.edu +http://www.mothur.org + +When using, please cite: +Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. + +Distributed under the GNU General Public License + +Type 'help()' for information on the commands that are available + +Type 'quit()' to exit program +Interactive Mode + + +mothur > summary.seqs(fasta=fasta.dat,processors=1) + +Using 1 processors. + + Start End NBases Ambigs Polymer NumSeqs +Minimum: 1 249 249 0 4 1 +2.5%-tile: 1 250 250 0 4 14 +25%-tile: 1 255 255 0 5 137 +Median: 1 256 256 0 5 273 +75%-tile: 1 256 256 0 5 409 +97.5%-tile: 1 258 258 0 5 532 +Maximum: 1 263 263 0 6 545 +Mean: 1 255.739 255.739 0 4.94679 +# of Seqs: 545 + +Output File Names: +fasta.summary + +It took 0 secs to summarize 545 sequences. +quit + +mothur > quit