view counttable-addsums.xml @ 0:607c5e7e0a64 draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/mycrobiota commit 1c4c58018b64ff3531a719e789ce71cb0a1244c5

<tool id="mycrobiota-counttable-totals" name="Counttable totals" version="0.1">
    <description>add line with total counts to your mothur count table</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <command detect_errors="aggressive"><![CDATA[
        python '$__tool_directory__/mycrobiota.py'
            --command counttable_totals
            -ct '$count_in'
            -o '$count_out'
    ]]></command>
    <inputs>
        <param name="count_in" type="data" format="mothur.count_table" label="Select count file"/>
    </inputs>
    <outputs>
        <data name="count_out" format="tabular" label="Count table with totals on ${on_string}"/>
    </outputs>
    <tests>
        <test>
            <param name="count_in" value="test.count_table" ftype="mothur.count_table"/>
            <output name="count_out" file="test-out.count_table" ftype="tabular"/>
        </test>
    </tests>
    <help><![CDATA[
        Takes a Mothur count table and adds a line to the end with the total counts per sample
    ]]></help>
    <expand macro="citations"/>
</tool>